Variant report

Variant	rs494071
Chromosome Location	chr11:83280423-83280424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10792688	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs10898126	0.88[CEU][hapmap];0.83[MEX][hapmap]
rs10898127	0.84[CEU][hapmap];0.83[MEX][hapmap]
rs10898136	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233632	0.82[CEU][hapmap]
rs11233649	0.83[MEX][hapmap];0.81[TSI][hapmap]
rs11607886	0.84[CEU][hapmap]
rs1225904	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1225905	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1225906	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1225907	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1228630	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1228632	0.83[CEU][hapmap]
rs12294291	0.87[CEU][hapmap]
rs1367984	0.83[CEU][hapmap]
rs1367985	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs1432053	0.83[CEU][hapmap];0.83[TSI][hapmap]
rs1432054	0.83[CEU][hapmap]
rs1465671	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs1469609	0.88[CEU][hapmap];0.83[MEX][hapmap]
rs1469610	0.84[CEU][hapmap]
rs1864774	0.83[CEU][hapmap]
rs1897372	0.83[CEU][hapmap]
rs1897373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2009715	0.87[CEU][hapmap];0.83[MEX][hapmap]
rs2116483	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs2248115	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2436151	0.80[EUR][1000 genomes]
rs2436152	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2436157	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2436158	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2508717	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2508720	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2512689	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3815986	0.84[CEU][hapmap];0.87[MEX][hapmap]
rs4399351	0.82[CEU][hapmap]
rs4500510	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4547114	0.83[CEU][hapmap]
rs4578410	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs472415	0.92[CEU][hapmap]
rs473255	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs478048	0.83[CEU][hapmap]
rs483020	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs488600	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs489752	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs491592	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs491633	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs494303	0.82[CHB][hapmap]
rs500059	0.92[CEU][hapmap];0.83[CHB][hapmap];0.80[CHD][hapmap];0.80[TSI][hapmap]
rs500359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs500571	0.87[CEU][hapmap];0.83[CHB][hapmap];0.80[TSI][hapmap]
rs500578	0.85[EUR][1000 genomes]
rs501139	0.83[ASW][hapmap];0.84[CEU][hapmap];0.91[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs505564	0.83[EUR][1000 genomes]
rs505621	0.91[CEU][hapmap]
rs505998	0.96[CEU][hapmap];0.80[CHD][hapmap];0.80[TSI][hapmap]
rs506718	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs513020	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs515618	0.82[CHB][hapmap]
rs526787	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs531531	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs532467	0.90[CHB][hapmap]
rs533209	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs534325	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs535809	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs536566	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs544159	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs544921	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs548327	0.86[CHB][hapmap]
rs553935	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.91[EUR][1000 genomes]
rs556199	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs558211	0.82[CHB][hapmap]
rs558350	0.91[EUR][1000 genomes]
rs558426	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs561890	0.80[CHB][hapmap]
rs575952	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs579420	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs581178	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs582207	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]
rs583944	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs585240	0.92[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes]
rs590014	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs591422	0.87[CHB][hapmap]
rs598934	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs600570	0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs601826	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs603174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs605303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605825	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs611766	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.92[EUR][1000 genomes]
rs614398	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs622934	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs625091	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs630105	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs631277	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs633191	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.91[EUR][1000 genomes]
rs634368	0.85[CEU][hapmap];0.94[JPT][hapmap]
rs635823	0.91[CHB][hapmap]
rs638692	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs638746	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs641838	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs643835	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs654442	0.92[EUR][1000 genomes]
rs656537	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592116	0.84[CEU][hapmap]
rs6592123	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs661927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs662966	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs663399	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs666845	0.94[ASW][hapmap];0.92[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs667730	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs668625	0.92[EUR][1000 genomes]
rs671321	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs676038	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs683250	0.83[EUR][1000 genomes]
rs684729	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs684857	0.92[CEU][hapmap];0.80[TSI][hapmap]
rs694613	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.80[YRI][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7131385	0.85[CEU][hapmap]
rs7927629	0.84[CEU][hapmap]
rs7930252	0.83[CEU][hapmap]
rs958246	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419257	chr11:83279698-83281748	Weak transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83277200-83280600	Enhancers	Hela-S3	cervix
2	chr11:83277200-83280800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:83278600-83283800	Weak transcription	NHEK	skin
4	chr11:83278600-83283800	Weak transcription	Osteobl	bone
5	chr11:83278600-83284800	Weak transcription	HSMMtube	muscle
6	chr11:83278600-83284800	Weak transcription	NHLF	lung
7	chr11:83278800-83283600	Weak transcription	NHDF-Ad	bronchial
8	chr11:83278800-83284400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:83279000-83282200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:83279000-83283600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:83279000-83283800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:83279000-83289800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:83279200-83280600	Weak transcription	Brain Substantia Nigra	brain
14	chr11:83279200-83282400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:83279200-83291200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:83279400-83280600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:83279400-83280600	Weak transcription	Brain Anterior Caudate	brain
18	chr11:83279400-83283600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:83279400-83284800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:83279600-83281200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:83280200-83281200	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr11:83280400-83281000	Enhancers	Brain Hippocampus Middle	brain

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