Variant report

Variant	rs1864774
Chromosome Location	chr11:83199276-83199277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10501540	0.81[JPT][hapmap]
rs1075718	0.87[CEU][hapmap]
rs10792686	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10792688	0.88[CEU][hapmap]
rs10898126	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898127	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898129	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11233632	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233649	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11600016	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs11601048	0.82[JPT][hapmap]
rs11606666	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs11607886	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12294291	0.96[CEU][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1367978	0.82[JPT][hapmap]
rs1367981	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1367982	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1367984	0.88[CEU][hapmap]
rs1367985	0.88[CEU][hapmap]
rs1432043	0.83[CHB][hapmap]
rs1432052	0.83[CEU][hapmap]
rs1432053	0.87[CEU][hapmap]
rs1432054	0.88[CEU][hapmap]
rs1432058	0.92[CEU][hapmap]
rs1465671	0.88[CEU][hapmap]
rs1469609	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1469610	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1864775	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1897372	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2009715	0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2116483	0.88[CEU][hapmap]
rs2195801	0.92[CEU][hapmap]
rs2374424	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2436152	0.84[CEU][hapmap]
rs2508720	0.84[CEU][hapmap]
rs2512660	0.81[EUR][1000 genomes]
rs3815986	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3815987	0.87[CEU][hapmap]
rs3815988	0.92[CEU][hapmap]
rs4341564	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4399351	0.87[CEU][hapmap]
rs4547114	0.88[CEU][hapmap]
rs472415	0.80[CEU][hapmap]
rs473255	0.84[CEU][hapmap]
rs483020	0.83[CEU][hapmap]
rs488600	0.83[CEU][hapmap]
rs494071	0.83[CEU][hapmap]
rs500359	0.84[CEU][hapmap]
rs506718	0.83[CEU][hapmap]
rs513020	0.83[CEU][hapmap]
rs531531	0.83[CEU][hapmap]
rs533209	0.83[CEU][hapmap]
rs535809	0.83[CEU][hapmap]
rs558426	0.83[CEU][hapmap]
rs575952	0.84[CEU][hapmap]
rs579420	0.88[CEU][hapmap]
rs581178	0.83[CEU][hapmap]
rs582207	0.81[CEU][hapmap]
rs590014	0.83[CEU][hapmap]
rs598934	0.84[CEU][hapmap]
rs600570	0.83[CEU][hapmap]
rs601826	0.83[CEU][hapmap]
rs603174	0.83[CEU][hapmap]
rs605303	0.84[CEU][hapmap]
rs605825	0.87[CEU][hapmap]
rs611766	0.80[CEU][hapmap]
rs630105	0.83[CEU][hapmap]
rs631277	0.84[CEU][hapmap]
rs633191	0.84[CEU][hapmap]
rs641838	0.83[CEU][hapmap]
rs6592116	1.00[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592117	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592119	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6592123	0.88[CEU][hapmap]
rs6592124	0.83[CEU][hapmap]
rs661927	0.84[CEU][hapmap]
rs662966	0.83[CEU][hapmap]
rs663399	0.83[CEU][hapmap]
rs667730	0.83[CEU][hapmap]
rs671321	0.83[CEU][hapmap]
rs7131385	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927629	1.00[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7930252	0.88[CEU][hapmap]
rs7948931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs919667	0.87[CEU][hapmap]
rs958246	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83192800-83211200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83195400-83201600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:83197400-83200200	Enhancers	Brain Hippocampus Middle	brain
4	chr11:83198600-83200800	Weak transcription	Brain Anterior Caudate	brain
5	chr11:83198800-83199400	Enhancers	Brain Substantia Nigra	brain

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