Variant report

Variant	rs1432054
Chromosome Location	chr11:83260225-83260226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs1075718	0.92[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs10792688	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792689	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898126	0.88[CEU][hapmap]
rs10898127	0.84[CEU][hapmap]
rs10898129	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898135	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233632	0.84[CEU][hapmap]
rs11233663	0.84[JPT][hapmap]
rs11233664	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607886	0.85[CEU][hapmap]
rs1228632	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs12294291	0.88[CEU][hapmap]
rs1347008	0.90[EUR][1000 genomes]
rs1367984	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367985	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432052	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432053	1.00[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432056	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1432058	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1465670	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465671	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469609	0.88[CEU][hapmap]
rs1469610	0.85[CEU][hapmap]
rs1835764	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1864774	0.88[CEU][hapmap]
rs1897372	0.84[CEU][hapmap];0.80[CHB][hapmap]
rs2009715	0.88[CEU][hapmap]
rs2116483	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116484	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195801	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2436152	0.84[CEU][hapmap]
rs2508720	0.84[CEU][hapmap]
rs3815986	0.84[CEU][hapmap]
rs3815987	0.92[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs3815988	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4303248	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4399351	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4547114	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472415	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs473255	0.84[CEU][hapmap]
rs477046	0.91[JPT][hapmap]
rs478048	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs478946	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs483020	0.84[CEU][hapmap]
rs488600	0.83[CEU][hapmap]
rs492607	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs494071	0.83[CEU][hapmap]
rs500059	0.91[CEU][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs500328	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs500359	0.84[CEU][hapmap]
rs500571	0.87[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs505564	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs505621	0.91[CEU][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs505998	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs506718	0.83[CEU][hapmap]
rs511740	0.91[JPT][hapmap]
rs512556	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs513020	0.83[CEU][hapmap]
rs518143	0.82[JPT][hapmap]
rs531531	0.83[CEU][hapmap]
rs533209	0.83[CEU][hapmap]
rs535809	0.83[CEU][hapmap]
rs556199	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs558426	0.83[CEU][hapmap]
rs575952	0.84[CEU][hapmap]
rs579420	0.81[CEU][hapmap]
rs581178	0.83[CEU][hapmap]
rs582207	0.81[CEU][hapmap]
rs590014	0.83[CEU][hapmap]
rs598934	0.84[CEU][hapmap]
rs600570	0.83[CEU][hapmap]
rs601826	0.83[CEU][hapmap]
rs603174	0.84[CEU][hapmap]
rs605303	0.84[CEU][hapmap]
rs605825	0.88[CEU][hapmap]
rs611766	0.81[CEU][hapmap]
rs630105	0.87[CEU][hapmap];0.82[CHB][hapmap]
rs631277	0.84[CEU][hapmap]
rs633191	0.84[CEU][hapmap]
rs641838	0.83[CEU][hapmap]
rs6592116	0.85[CEU][hapmap]
rs6592120	0.82[JPT][hapmap]
rs6592122	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592123	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592124	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661927	0.84[CEU][hapmap]
rs662545	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs662966	0.83[CEU][hapmap]
rs663399	0.83[CEU][hapmap]
rs666845	0.91[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs667730	0.83[CEU][hapmap]
rs671321	0.83[CEU][hapmap]
rs683250	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs684857	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs7113026	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113167	0.82[JPT][hapmap]
rs7113293	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116058	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7122339	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7131385	0.86[CEU][hapmap]
rs7927629	0.85[CEU][hapmap]
rs7928920	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7930252	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7934399	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs919667	0.92[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs958246	0.88[CEU][hapmap]
rs9634001	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1432054	CCDC90B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83255600-83261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:83256000-83261400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:83256200-83261400	Weak transcription	NHEK	skin
4	chr11:83257200-83265600	Weak transcription	Fetal Stomach	stomach
5	chr11:83257400-83261600	Weak transcription	Fetal Lung	lung
6	chr11:83257600-83261000	Weak transcription	Brain Angular Gyrus	brain
7	chr11:83257600-83261200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:83257600-83261200	Weak transcription	Brain Germinal Matrix	brain
9	chr11:83258200-83261200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:83258200-83261800	Weak transcription	Brain Substantia Nigra	brain
11	chr11:83259200-83261800	Enhancers	Hela-S3	cervix
12	chr11:83260000-83262600	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:83260200-83261200	Weak transcription	Brain Anterior Caudate	brain
14	chr11:83260200-83262400	Enhancers	Brain Hippocampus Middle	brain

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