Variant report

Variant	rs512556
Chromosome Location	chr11:83288085-83288086
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10792688	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10792689	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10898129	0.81[EUR][1000 genomes]
rs10898135	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11233664	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1228632	0.81[EUR][1000 genomes]
rs1367984	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1367985	0.87[AMR][1000 genomes]
rs1432052	0.87[AMR][1000 genomes]
rs1432053	0.87[AMR][1000 genomes]
rs1432054	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1432056	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1432058	0.81[EUR][1000 genomes]
rs1465670	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1465671	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1897373	0.80[EUR][1000 genomes]
rs2116483	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2116484	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2195801	0.81[EUR][1000 genomes]
rs2436158	0.80[EUR][1000 genomes]
rs3815988	0.81[EUR][1000 genomes]
rs4303248	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4399351	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4547114	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs472415	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs478048	0.81[EUR][1000 genomes]
rs478946	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs488600	0.80[EUR][1000 genomes]
rs492607	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs495946	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs500059	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs500328	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs500571	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs501473	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs505564	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs505621	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs505998	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs523494	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs526787	0.80[EUR][1000 genomes]
rs536566	0.80[EUR][1000 genomes]
rs556199	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs590014	0.80[EUR][1000 genomes]
rs603174	0.83[EUR][1000 genomes]
rs605303	0.80[EUR][1000 genomes]
rs605825	0.80[EUR][1000 genomes]
rs638692	0.80[EUR][1000 genomes]
rs638746	0.80[EUR][1000 genomes]
rs641838	0.84[EUR][1000 genomes]
rs646014	0.88[EUR][1000 genomes]
rs6592122	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6592123	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6592124	0.87[AMR][1000 genomes]
rs661927	0.80[EUR][1000 genomes]
rs662545	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs666845	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs667730	0.80[EUR][1000 genomes]
rs67878169	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs683250	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs684857	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7113026	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7113293	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7116058	0.88[AMR][1000 genomes]
rs7122339	0.81[EUR][1000 genomes]
rs7928920	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7930252	0.81[AMR][1000 genomes]
rs7934399	0.88[AMR][1000 genomes]
rs9634001	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3373640	chr11:83287329-83290177	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
2	esv3327721	chr11:83287679-83290202	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83279000-83289800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:83279200-83291200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:83283800-83291400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:83286400-83290000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:83286400-83294200	Weak transcription	NHEK	skin
6	chr11:83288000-83289800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:83288000-83290000	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links