Variant report

Variant	rs11233664
Chromosome Location	chr11:83253641-83253642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1075718	0.86[EUR][1000 genomes]
rs10792688	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792689	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898129	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898135	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347008	0.89[EUR][1000 genomes]
rs1367984	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367985	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432052	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432053	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432054	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432056	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1432058	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1465670	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465671	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835764	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2116483	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116484	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195801	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3815987	0.89[EUR][1000 genomes]
rs3815988	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4303248	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4399351	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4547114	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472415	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs478946	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs492607	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs495946	0.84[AMR][1000 genomes]
rs500059	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs500328	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs500571	0.84[AMR][1000 genomes]
rs505564	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs505621	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs512556	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs556199	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592122	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592123	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592124	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs662545	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs666845	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs683250	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs684857	0.80[AMR][1000 genomes]
rs7113026	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113293	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116058	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7122339	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7928920	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7930252	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7934399	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs919667	0.89[EUR][1000 genomes]
rs9634001	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11233664	CCDC90B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83245200-83255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:83251000-83257600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:83251000-83257600	Enhancers	Brain Anterior Caudate	brain
4	chr11:83251000-83258200	Enhancers	Brain Hippocampus Middle	brain
5	chr11:83251200-83257400	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:83251200-83258200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:83251400-83255200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:83251400-83255600	Enhancers	Fetal Brain Male	brain
9	chr11:83251400-83257600	Enhancers	Brain Angular Gyrus	brain
10	chr11:83251600-83255400	Weak transcription	Small Intestine	intestine
11	chr11:83251600-83258200	Enhancers	Brain Substantia Nigra	brain
12	chr11:83251800-83254000	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:83252000-83254200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:83252000-83254400	Weak transcription	Fetal Stomach	stomach
15	chr11:83252600-83256600	Weak transcription	Fetal Lung	lung
16	chr11:83252800-83254600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:83252800-83258200	Enhancers	Fetal Intestine Large	intestine
18	chr11:83253000-83254000	Weak transcription	Hela-S3	cervix
19	chr11:83253200-83254400	Weak transcription	Fetal Intestine Small	intestine
20	chr11:83253600-83254200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:83253600-83254800	Enhancers	Fetal Brain Female	brain
22	chr11:83253600-83258000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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