Variant report

Variant	rs478946
Chromosome Location	chr11:83297563-83297564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10792688	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10792689	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10898135	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11233664	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1228632	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1367984	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1367985	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1432052	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1432053	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1432054	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1432056	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1432058	0.81[EUR][1000 genomes]
rs1465670	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1465671	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2116483	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2116484	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2195801	0.81[EUR][1000 genomes]
rs2248115	0.81[EUR][1000 genomes]
rs2508720	0.80[EUR][1000 genomes]
rs3815988	0.81[EUR][1000 genomes]
rs4303248	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4399351	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4547114	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs472415	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs478048	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs489752	0.81[EUR][1000 genomes]
rs491592	0.81[EUR][1000 genomes]
rs491633	0.81[EUR][1000 genomes]
rs492607	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs495946	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs500059	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs500328	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs500571	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs501473	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs505564	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs505621	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs505998	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs506718	0.81[EUR][1000 genomes]
rs511740	0.81[EUR][1000 genomes]
rs512556	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs513020	0.80[EUR][1000 genomes]
rs518143	0.81[AFR][1000 genomes]
rs523494	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs535809	0.80[EUR][1000 genomes]
rs544159	0.80[EUR][1000 genomes]
rs544921	0.80[EUR][1000 genomes]
rs556199	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs603174	0.82[EUR][1000 genomes]
rs641838	0.82[EUR][1000 genomes]
rs643835	0.80[EUR][1000 genomes]
rs646014	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6592122	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6592123	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6592124	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs662545	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs666845	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs671321	0.80[EUR][1000 genomes]
rs67878169	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs683250	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs684857	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7113026	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7113293	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7116058	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7122339	0.81[EUR][1000 genomes]
rs7928920	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7934399	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83295800-83298000	Enhancers	GM12878-XiMat	blood
2	chr11:83297200-83311600	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83297400-83299000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links