Variant report

Variant	rs1432056
Chromosome Location	chr11:83285438-83285439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10792688	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10792689	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10898129	0.81[EUR][1000 genomes]
rs10898135	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11233664	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1228632	0.81[EUR][1000 genomes]
rs1367984	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1367985	0.86[AMR][1000 genomes]
rs1432052	0.86[AMR][1000 genomes]
rs1432053	0.86[AMR][1000 genomes]
rs1432054	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1432058	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1465670	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1465671	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1897373	0.80[EUR][1000 genomes]
rs2116483	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2116484	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2195801	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2436158	0.80[EUR][1000 genomes]
rs3815988	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4303248	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4399351	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4547114	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs472415	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs478048	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs478946	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs488600	0.80[EUR][1000 genomes]
rs492607	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs495946	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs500059	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs500328	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs500571	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs501473	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs505564	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs505621	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs505998	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs512556	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs518143	0.87[AFR][1000 genomes]
rs523494	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs526787	0.80[EUR][1000 genomes]
rs536566	0.80[EUR][1000 genomes]
rs556199	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs590014	0.80[EUR][1000 genomes]
rs603174	0.83[EUR][1000 genomes]
rs605303	0.80[EUR][1000 genomes]
rs605825	0.80[EUR][1000 genomes]
rs638692	0.80[EUR][1000 genomes]
rs638746	0.80[EUR][1000 genomes]
rs641838	0.84[EUR][1000 genomes]
rs646014	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6592122	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6592123	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6592124	0.86[AMR][1000 genomes]
rs661927	0.80[EUR][1000 genomes]
rs662545	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs666845	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs667730	0.80[EUR][1000 genomes]
rs67878169	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs683250	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs684857	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7113026	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7113293	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7116058	0.87[AMR][1000 genomes]
rs7122339	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7928920	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7930252	0.80[AMR][1000 genomes]
rs7934399	0.87[AMR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83279000-83289800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:83279200-83291200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:83281000-83285800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:83281200-83286800	Enhancers	Hela-S3	cervix
5	chr11:83282600-83286200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:83283600-83286400	Enhancers	NHDF-Ad	bronchial
7	chr11:83283800-83286200	Enhancers	Osteobl	bone
8	chr11:83283800-83286400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:83283800-83286400	Enhancers	NHEK	skin
10	chr11:83283800-83291400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:83284000-83285800	Weak transcription	Brain Substantia Nigra	brain
12	chr11:83284400-83285800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:83284600-83285600	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:83284800-83285800	Enhancers	NHLF	lung
15	chr11:83284800-83286000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:83284800-83286200	Enhancers	HSMMtube	muscle
17	chr11:83284800-83286400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:83285000-83286000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:83285000-83286000	Enhancers	HSMM	muscle
20	chr11:83285000-83286200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:83285200-83286000	Enhancers	HMEC	breast
22	chr11:83285200-83286200	Weak transcription	Brain Anterior Caudate	brain
23	chr11:83285400-83286200	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links