Variant report

Variant	rs10898129
Chromosome Location	chr11:83219978-83219979
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1075718	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10792686	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10792688	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10792689	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898126	0.82[EUR][1000 genomes]
rs10898127	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10898135	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11233649	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11233664	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11607886	0.82[AMR][1000 genomes]
rs1347008	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1367981	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1367982	0.83[AMR][1000 genomes]
rs1367984	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1367985	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1432052	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1432053	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1432054	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1432056	0.81[EUR][1000 genomes]
rs1432058	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1465670	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1465671	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1469610	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1835764	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1864774	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1897372	0.83[AMR][1000 genomes]
rs2009715	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2116483	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2116484	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2195801	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2374424	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2507849	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2507867	0.80[EUR][1000 genomes]
rs2510479	0.80[EUR][1000 genomes]
rs2512663	0.83[EUR][1000 genomes]
rs2512670	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2512691	0.80[EUR][1000 genomes]
rs3815987	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3815988	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4341564	0.83[AMR][1000 genomes]
rs4399351	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4547114	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs472415	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs500059	0.81[EUR][1000 genomes]
rs500328	0.80[EUR][1000 genomes]
rs505621	0.80[EUR][1000 genomes]
rs512556	0.81[EUR][1000 genomes]
rs6592116	0.83[AMR][1000 genomes]
rs6592117	0.83[AMR][1000 genomes]
rs6592122	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592123	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592124	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs662545	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7113026	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7113293	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7116058	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7122339	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7131385	0.83[AMR][1000 genomes]
rs7927629	0.83[AMR][1000 genomes]
rs7928920	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7930252	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7934399	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7948931	0.82[AMR][1000 genomes]
rs919667	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9634001	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10898129	CCDC90B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83211400-83220000	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83211600-83222200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:83218000-83221600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:83219000-83220400	Enhancers	Brain Substantia Nigra	brain
5	chr11:83219400-83222600	Enhancers	Fetal Intestine Large	intestine
6	chr11:83219600-83220000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr11:83219600-83220400	Enhancers	Liver	Liver
8	chr11:83219600-83220600	Enhancers	Duodenum Mucosa	Duodenum
9	chr11:83219600-83220800	Enhancers	Fetal Intestine Small	intestine
10	chr11:83219600-83221000	Enhancers	HepG2	liver
11	chr11:83219800-83220200	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:83219800-83220200	Enhancers	Brain Hippocampus Middle	brain
13	chr11:83219800-83220400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:83219800-83220600	Enhancers	Brain Anterior Caudate	brain

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