Variant report

Variant	rs1347008
Chromosome Location	chr11:83179691-83179692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1075718	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10792688	0.86[EUR][1000 genomes]
rs10792689	0.86[EUR][1000 genomes]
rs10898119	0.81[ASN][1000 genomes]
rs10898121	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10898126	0.80[EUR][1000 genomes]
rs10898129	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10898135	0.86[EUR][1000 genomes]
rs11233603	0.81[AFR][1000 genomes]
rs11233664	0.89[EUR][1000 genomes]
rs11523976	0.80[AMR][1000 genomes]
rs1367984	0.86[EUR][1000 genomes]
rs1367985	0.86[EUR][1000 genomes]
rs1432052	0.86[EUR][1000 genomes]
rs1432053	0.86[EUR][1000 genomes]
rs1432054	0.90[EUR][1000 genomes]
rs1432058	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1465670	0.86[EUR][1000 genomes]
rs1465671	0.86[EUR][1000 genomes]
rs1469609	0.82[AMR][1000 genomes]
rs1469610	0.83[AMR][1000 genomes]
rs1835764	0.84[EUR][1000 genomes]
rs1943748	0.80[AMR][1000 genomes]
rs1943749	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2009715	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2116483	0.86[EUR][1000 genomes]
rs2116484	0.86[EUR][1000 genomes]
rs2195801	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2226416	0.81[AFR][1000 genomes]
rs2374424	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2507849	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2507852	0.80[AMR][1000 genomes]
rs2507860	0.81[ASN][1000 genomes]
rs2507861	0.81[ASN][1000 genomes]
rs2507865	0.81[ASN][1000 genomes]
rs2507867	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2510471	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2510473	0.81[ASN][1000 genomes]
rs2510474	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2510475	0.81[ASN][1000 genomes]
rs2510476	0.80[AMR][1000 genomes]
rs2510477	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2510478	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2510479	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2512657	0.81[ASN][1000 genomes]
rs2512659	0.81[ASN][1000 genomes]
rs2512661	0.81[ASN][1000 genomes]
rs2512663	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2512666	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2512670	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2512677	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2512681	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2512682	0.80[AMR][1000 genomes]
rs2512685	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2512688	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2512690	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2512691	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35446705	0.81[AFR][1000 genomes]
rs3815987	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3815988	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4121831	0.81[AFR][1000 genomes]
rs4399351	0.86[EUR][1000 genomes]
rs4547114	0.86[EUR][1000 genomes]
rs472415	0.82[EUR][1000 genomes]
rs6592122	0.86[EUR][1000 genomes]
rs6592123	0.86[EUR][1000 genomes]
rs6592124	0.84[EUR][1000 genomes]
rs662545	0.82[EUR][1000 genomes]
rs7113026	0.86[EUR][1000 genomes]
rs7113293	0.86[EUR][1000 genomes]
rs7116058	0.87[EUR][1000 genomes]
rs7122339	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7928920	0.86[EUR][1000 genomes]
rs7930252	0.86[EUR][1000 genomes]
rs7934399	0.86[EUR][1000 genomes]
rs919667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs947796	0.81[AFR][1000 genomes]
rs9634001	0.88[EUR][1000 genomes]
rs999429	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1347008	CCDC90B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83167200-83179800	Weak transcription	Fetal Brain Female	brain
2	chr11:83167200-83182200	Weak transcription	Fetal Lung	lung
3	chr11:83167400-83183200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:83169200-83183400	Weak transcription	Ovary	ovary
5	chr11:83170600-83186800	Weak transcription	Brain Substantia Nigra	brain
6	chr11:83171400-83182800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:83171400-83183200	Weak transcription	Fetal Stomach	stomach
8	chr11:83175000-83182800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:83175600-83183600	Weak transcription	Brain Angular Gyrus	brain
10	chr11:83175800-83181800	Weak transcription	Aorta	Aorta
11	chr11:83175800-83182200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:83175800-83183000	Weak transcription	Brain Anterior Caudate	brain
13	chr11:83176000-83184000	Weak transcription	Liver	Liver
14	chr11:83177200-83182600	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:83177600-83181200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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