Variant report

Variant	rs1469610
Chromosome Location	chr11:83193595-83193596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10501540	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs10751093	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1075718	0.84[CEU][hapmap];0.81[AMR][1000 genomes]
rs10792686	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10792688	0.84[CEU][hapmap]
rs10898126	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10898127	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898129	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10898133	0.83[CHB][hapmap]
rs11233632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233641	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs11233649	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233654	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs11233657	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs11600016	0.86[JPT][hapmap]
rs11601048	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11606666	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs11607886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12223102	0.83[CHB][hapmap]
rs12294291	0.96[CEU][hapmap];0.90[ASN][1000 genomes]
rs12794550	0.83[CHB][hapmap]
rs1347008	0.83[AMR][1000 genomes]
rs1367978	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1367981	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1367982	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1367984	0.84[CEU][hapmap]
rs1367985	0.84[CEU][hapmap]
rs1432043	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1432044	0.81[JPT][hapmap]
rs1432049	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1432053	0.84[CEU][hapmap]
rs1432054	0.85[CEU][hapmap]
rs1432058	0.88[CEU][hapmap]
rs1465671	0.84[CEU][hapmap]
rs1469609	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1864774	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1864775	0.85[JPT][hapmap]
rs1897372	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2009715	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2116483	0.84[CEU][hapmap]
rs2195801	0.88[CEU][hapmap]
rs2374424	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2436152	0.84[CEU][hapmap]
rs2508720	0.84[CEU][hapmap]
rs3815986	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3815987	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs3815988	0.88[CEU][hapmap]
rs4341564	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4399351	0.84[CEU][hapmap]
rs4547114	0.85[CEU][hapmap]
rs473255	0.84[CEU][hapmap]
rs483020	0.84[CEU][hapmap]
rs488600	0.84[CEU][hapmap]
rs494071	0.84[CEU][hapmap]
rs500359	0.84[CEU][hapmap]
rs506718	0.83[CEU][hapmap]
rs513020	0.84[CEU][hapmap]
rs531531	0.84[CEU][hapmap]
rs533209	0.84[CEU][hapmap]
rs535809	0.84[CEU][hapmap]
rs558426	0.84[CEU][hapmap]
rs575952	0.84[CEU][hapmap]
rs579420	0.88[CEU][hapmap]
rs581178	0.83[CEU][hapmap]
rs582207	0.82[CEU][hapmap]
rs585240	0.80[CEU][hapmap]
rs590014	0.84[CEU][hapmap]
rs598934	0.84[CEU][hapmap]
rs600570	0.84[CEU][hapmap]
rs601826	0.84[CEU][hapmap]
rs603174	0.84[CEU][hapmap]
rs605303	0.84[CEU][hapmap]
rs605825	0.88[CEU][hapmap]
rs611766	0.81[CEU][hapmap]
rs630105	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs631277	0.84[CEU][hapmap]
rs633191	0.84[CEU][hapmap]
rs641838	0.83[CEU][hapmap]
rs6592116	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6592117	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6592119	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6592123	0.84[CEU][hapmap]
rs661927	0.84[CEU][hapmap]
rs662966	0.84[CEU][hapmap]
rs663399	0.84[CEU][hapmap]
rs667730	0.84[CEU][hapmap]
rs671321	0.84[CEU][hapmap]
rs7127319	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7127859	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7131385	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7927629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7930252	0.85[CEU][hapmap]
rs7948931	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919667	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs958246	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83187200-83196600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:83191600-83193800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:83191600-83194000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:83191800-83195800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:83192200-83194000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:83192200-83195000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:83192200-83196800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:83192400-83195000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:83192400-83196000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:83192800-83194200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:83192800-83195000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:83192800-83195000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:83192800-83195000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:83192800-83195200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:83192800-83196400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:83192800-83197400	Weak transcription	Brain Angular Gyrus	brain
17	chr11:83192800-83211200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:83193000-83195000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:83193000-83197600	Weak transcription	Brain Anterior Caudate	brain
20	chr11:83193200-83194000	Enhancers	Pancreatic Islets	Pancreatic Islet

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