Variant report

Variant	rs12294291
Chromosome Location	chr11:83197722-83197723
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:83197614-83197812	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr11:83197522-83197816	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
DLG2	TF binding region

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1075718	0.87[CEU][hapmap]
rs10792686	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10792688	0.88[CEU][hapmap]
rs10898126	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898127	0.96[CEU][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11233632	0.96[CEU][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11233649	0.92[CEU][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11607886	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1367981	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1367982	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1367984	0.88[CEU][hapmap]
rs1367985	0.88[CEU][hapmap]
rs1432052	0.83[CEU][hapmap]
rs1432053	0.87[CEU][hapmap]
rs1432054	0.88[CEU][hapmap]
rs1432058	0.92[CEU][hapmap]
rs1465671	0.88[CEU][hapmap]
rs1469609	1.00[CEU][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1469610	0.96[CEU][hapmap];0.90[ASN][1000 genomes]
rs1864774	0.96[CEU][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1897372	0.96[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2009715	1.00[CEU][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2116483	0.88[CEU][hapmap]
rs2195801	0.92[CEU][hapmap]
rs2374424	0.80[ASN][1000 genomes]
rs2436152	0.88[CEU][hapmap]
rs2508720	0.88[CEU][hapmap]
rs3815986	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs3815987	0.87[CEU][hapmap]
rs3815988	0.92[CEU][hapmap]
rs4341564	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4399351	0.87[CEU][hapmap]
rs4547114	0.88[CEU][hapmap]
rs472415	0.80[CEU][hapmap]
rs473255	0.88[CEU][hapmap]
rs483020	0.87[CEU][hapmap]
rs488600	0.87[CEU][hapmap]
rs494071	0.87[CEU][hapmap]
rs500359	0.88[CEU][hapmap]
rs505998	0.83[CEU][hapmap]
rs506718	0.87[CEU][hapmap]
rs513020	0.87[CEU][hapmap]
rs531531	0.87[CEU][hapmap]
rs533209	0.87[CEU][hapmap]
rs535809	0.87[CEU][hapmap]
rs553935	0.83[CEU][hapmap]
rs558426	0.87[CEU][hapmap]
rs575952	0.88[CEU][hapmap]
rs579420	0.84[CEU][hapmap]
rs581178	0.87[CEU][hapmap]
rs582207	0.86[CEU][hapmap]
rs583944	0.83[CEU][hapmap]
rs585240	0.84[CEU][hapmap]
rs590014	0.87[CEU][hapmap]
rs598934	0.88[CEU][hapmap]
rs600570	0.87[CEU][hapmap]
rs601826	0.87[CEU][hapmap]
rs603174	0.87[CEU][hapmap]
rs605303	0.88[CEU][hapmap]
rs605825	0.91[CEU][hapmap]
rs611766	0.84[CEU][hapmap]
rs630105	0.86[CEU][hapmap]
rs631277	0.88[CEU][hapmap]
rs633191	0.88[CEU][hapmap]
rs641838	0.87[CEU][hapmap]
rs6592116	0.96[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6592117	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6592119	0.81[EUR][1000 genomes]
rs6592123	0.88[CEU][hapmap]
rs6592124	0.83[CEU][hapmap]
rs661927	0.88[CEU][hapmap]
rs662966	0.87[CEU][hapmap]
rs663399	0.87[CEU][hapmap]
rs667730	0.87[CEU][hapmap]
rs671321	0.87[CEU][hapmap]
rs694613	0.83[CEU][hapmap]
rs7131385	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7927629	0.96[CEU][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7930252	0.88[CEU][hapmap]
rs7948931	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs919667	0.87[CEU][hapmap]
rs958246	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83192800-83211200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83195000-83197800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:83195200-83197800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:83195400-83201600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:83195600-83197800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:83196800-83198600	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:83197400-83200200	Enhancers	Brain Hippocampus Middle	brain
8	chr11:83197600-83198000	Weak transcription	Brain Angular Gyrus	brain
9	chr11:83197600-83198600	Enhancers	Brain Anterior Caudate	brain
10	chr11:83197600-83198800	Weak transcription	Brain Substantia Nigra	brain

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