Variant report

Variant	rs4341564
Chromosome Location	chr11:83231605-83231606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10792686	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898126	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10898127	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898129	0.83[AMR][1000 genomes]
rs11233632	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11233649	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11607886	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1225904	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1225905	0.80[ASN][1000 genomes]
rs1225906	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1225907	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1228630	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12294291	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1367981	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1367982	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1469609	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1469610	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1864774	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1897372	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2009715	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2374424	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2436157	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2512689	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3815986	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs473255	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs501139	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs533209	0.80[ASN][1000 genomes]
rs575952	0.81[EUR][1000 genomes]
rs581178	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs600570	0.80[ASN][1000 genomes]
rs631277	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6592116	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592117	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592119	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs662966	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs663399	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7131385	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7927629	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7948931	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs958246	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425818	chr11:83231572-83231804	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83222200-83231800	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83229800-83236600	Weak transcription	Pancreas	Pancrea
3	chr11:83231400-83233400	Enhancers	Brain Angular Gyrus	brain
4	chr11:83231600-83232600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr11:83231600-83233000	Enhancers	Cortex derived primary cultured neurospheres	brain

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