Variant report

Variant	rs7131385
Chromosome Location	chr11:83204471-83204472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83009664..83011493-chr11:83201921..83204863,2	MCF-7	breast:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10501540	0.86[CHB][hapmap]
rs10751093	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1075718	0.85[CEU][hapmap]
rs10792686	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792688	0.86[CEU][hapmap]
rs10898126	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10898127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10898129	0.83[AMR][1000 genomes]
rs10898133	0.86[CHB][hapmap]
rs11233628	0.81[CHB][hapmap]
rs11233632	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233641	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs11233649	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233654	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs11233657	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs11600016	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs11601048	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11606666	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs11607886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223102	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs12294291	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12794550	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1367978	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1367981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1367982	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367984	0.86[CEU][hapmap]
rs1367985	0.86[CEU][hapmap]
rs1432043	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1432044	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs1432049	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1432052	0.85[CEU][hapmap]
rs1432053	0.85[CEU][hapmap]
rs1432054	0.86[CEU][hapmap]
rs1432058	0.90[CEU][hapmap];0.82[JPT][hapmap]
rs1465671	0.86[CEU][hapmap]
rs1469609	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1469610	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1864774	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1864775	0.81[CHB][hapmap]
rs1897372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2009715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2116483	0.86[CEU][hapmap]
rs2195801	0.90[CEU][hapmap];0.81[JPT][hapmap]
rs2374424	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2436152	0.86[CEU][hapmap]
rs2508720	0.86[CEU][hapmap]
rs2512660	0.81[EUR][1000 genomes]
rs3815986	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3815987	0.85[CEU][hapmap]
rs3815988	0.90[CEU][hapmap];0.81[JPT][hapmap]
rs4341564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4399351	0.85[CEU][hapmap]
rs4547114	0.86[CEU][hapmap]
rs473255	0.86[CEU][hapmap]
rs483020	0.85[CEU][hapmap]
rs488600	0.85[CEU][hapmap]
rs494071	0.85[CEU][hapmap]
rs500359	0.86[CEU][hapmap]
rs506718	0.85[CEU][hapmap]
rs513020	0.85[CEU][hapmap]
rs531531	0.85[CEU][hapmap]
rs533209	0.85[CEU][hapmap]
rs535809	0.85[CEU][hapmap]
rs553935	0.81[CEU][hapmap]
rs558426	0.85[CEU][hapmap]
rs575952	0.86[CEU][hapmap];0.80[JPT][hapmap]
rs579420	0.86[CEU][hapmap]
rs581178	0.85[CEU][hapmap];0.80[JPT][hapmap]
rs582207	0.82[CEU][hapmap]
rs583944	0.81[CEU][hapmap]
rs585240	0.81[CEU][hapmap]
rs590014	0.85[CEU][hapmap]
rs598934	0.86[CEU][hapmap]
rs600570	0.85[CEU][hapmap]
rs601826	0.85[CEU][hapmap]
rs603174	0.85[CEU][hapmap]
rs605303	0.85[CEU][hapmap]
rs605825	0.90[CEU][hapmap]
rs611766	0.81[CEU][hapmap]
rs630105	0.84[CEU][hapmap]
rs631277	0.86[CEU][hapmap];0.80[JPT][hapmap]
rs633191	0.86[CEU][hapmap]
rs641838	0.85[CEU][hapmap]
rs6592116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592119	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6592123	0.86[CEU][hapmap]
rs6592124	0.80[CEU][hapmap]
rs661927	0.85[CEU][hapmap]
rs662966	0.85[CEU][hapmap];0.80[JPT][hapmap]
rs663399	0.85[CEU][hapmap]
rs667730	0.85[CEU][hapmap]
rs671321	0.85[CEU][hapmap]
rs694613	0.81[CEU][hapmap]
rs7116939	0.81[CHB][hapmap]
rs7127319	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs7127859	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs7927629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930252	0.86[CEU][hapmap];0.82[JPT][hapmap]
rs7948931	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs919667	0.85[CEU][hapmap]
rs958246	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83192800-83211200	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links