Variant report

Variant	rs1075718
Chromosome Location	chr11:83175210-83175211
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr11:83174791-83176124	H1-neurons	neurons:	n/a	n/a
2	MAFK	chr11:83175206-83175378	IMR90	lung:	n/a	chr11:83175299-83175315
3	POLR2A	chr11:83174969-83175891	H1-neurons	neurons:	n/a	n/a
4	REST	chr11:83175113-83175842	H1-neurons	neurons:	n/a	n/a
5	POLR2A	chr11:83174901-83175927	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
DLG2	TF binding region

Extended variants
information (count: 108 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10792688	0.92[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs10792689	0.83[EUR][1000 genomes]
rs10898119	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10898121	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10898126	0.88[CEU][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs10898127	0.84[CEU][hapmap];0.84[MEX][hapmap]
rs10898129	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10898135	0.83[EUR][1000 genomes]
rs11233603	0.80[AMR][1000 genomes]
rs11233632	0.82[CEU][hapmap]
rs11233649	0.84[MEX][hapmap];0.81[TSI][hapmap]
rs11233664	0.86[EUR][1000 genomes]
rs1151243	0.83[YRI][hapmap]
rs11523976	0.82[AMR][1000 genomes]
rs11607886	0.84[CEU][hapmap]
rs12294291	0.87[CEU][hapmap]
rs1347008	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1367984	0.91[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs1367985	0.92[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs1432052	0.87[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs1432053	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs1432054	0.92[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs1432058	0.96[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs1465670	0.83[EUR][1000 genomes]
rs1465671	0.92[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs1469609	0.88[CEU][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs1469610	0.84[CEU][hapmap];0.81[AMR][1000 genomes]
rs1835764	0.82[EUR][1000 genomes]
rs1864774	0.87[CEU][hapmap]
rs1897372	0.83[CEU][hapmap]
rs1943748	0.82[AMR][1000 genomes]
rs1943749	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2009715	0.87[CEU][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs2116483	0.92[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs2116484	0.83[EUR][1000 genomes]
rs2163612	0.92[ASW][hapmap];0.81[CHD][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2195801	0.96[CEU][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs2226416	0.80[AMR][1000 genomes]
rs2374424	0.81[AMR][1000 genomes]
rs2507849	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2507852	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2507855	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2507857	0.80[ASN][1000 genomes]
rs2507859	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2507860	0.82[ASN][1000 genomes]
rs2507861	0.82[ASN][1000 genomes]
rs2507862	0.81[ASN][1000 genomes]
rs2507863	0.80[ASN][1000 genomes]
rs2507865	0.83[ASN][1000 genomes]
rs2507867	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2510471	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2510473	0.82[ASN][1000 genomes]
rs2510474	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2510475	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2510476	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2510477	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2510478	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2510479	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2512657	0.83[ASN][1000 genomes]
rs2512659	0.83[ASN][1000 genomes]
rs2512661	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2512663	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2512666	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2512670	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2512677	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2512678	0.81[ASN][1000 genomes]
rs2512679	0.81[ASN][1000 genomes]
rs2512681	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2512682	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2512685	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2512688	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2512690	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2512691	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2846424	0.91[YRI][hapmap]
rs35446705	0.80[AMR][1000 genomes]
rs3815986	0.84[CEU][hapmap]
rs3815987	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3815988	0.96[CEU][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs4399351	0.91[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs4547114	0.92[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs472415	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs494791	0.88[GIH][hapmap];0.83[YRI][hapmap]
rs500059	0.83[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs500571	0.81[GIH][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap]
rs505621	0.82[CEU][hapmap]
rs505998	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs566703	0.88[YRI][hapmap]
rs645169	0.83[YRI][hapmap]
rs6592116	0.84[CEU][hapmap]
rs6592122	0.83[EUR][1000 genomes]
rs6592123	0.92[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs6592124	0.87[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs666845	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs671991	1.00[YRI][hapmap]
rs684857	0.83[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap]
rs7113026	0.83[EUR][1000 genomes]
rs7113293	0.83[EUR][1000 genomes]
rs7116058	0.85[EUR][1000 genomes]
rs7122339	0.89[EUR][1000 genomes]
rs7131385	0.85[CEU][hapmap]
rs7927629	0.84[CEU][hapmap]
rs7928920	0.83[EUR][1000 genomes]
rs7930252	0.92[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs7934399	0.83[EUR][1000 genomes]
rs919667	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs958246	0.88[CEU][hapmap]
rs9634001	0.86[EUR][1000 genomes]
rs999429	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1075718	EED	cis	parietal	SCAN
rs1075718	CCDC90B	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83167200-83179800	Weak transcription	Fetal Brain Female	brain
2	chr11:83167200-83182200	Weak transcription	Fetal Lung	lung
3	chr11:83167400-83178000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:83167400-83179000	Weak transcription	Brain Germinal Matrix	brain
5	chr11:83167400-83183200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:83168200-83175600	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:83169200-83183400	Weak transcription	Ovary	ovary
8	chr11:83170600-83186800	Weak transcription	Brain Substantia Nigra	brain
9	chr11:83171400-83182800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:83171400-83183200	Weak transcription	Fetal Stomach	stomach
11	chr11:83173200-83175800	Strong transcription	Brain Anterior Caudate	brain
12	chr11:83174200-83177600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:83174400-83175600	Strong transcription	Brain Angular Gyrus	brain
14	chr11:83174600-83175800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:83174600-83175800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:83174600-83176000	Strong transcription	Liver	Liver
17	chr11:83175000-83176800	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:83175000-83182800	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links