Variant report

Variant	rs6592122
Chromosome Location	chr11:83257755-83257756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83255700..83257941-chr11:83263394..83265882,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1075718	0.83[EUR][1000 genomes]
rs10792688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898129	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233664	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347008	0.86[EUR][1000 genomes]
rs1367984	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367985	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432054	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432056	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1432058	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1465670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835764	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2116483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195801	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3815987	0.86[EUR][1000 genomes]
rs3815988	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4303248	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4399351	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4547114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472415	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs478946	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs492607	0.84[AMR][1000 genomes]
rs500059	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs500328	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs505564	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs505621	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs512556	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs556199	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs662545	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs666845	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs683250	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7113026	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116058	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7122339	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7928920	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7930252	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7934399	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs919667	0.86[EUR][1000 genomes]
rs9634001	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6592122	CCDC90B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83251000-83258200	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83251200-83258200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr11:83251600-83258200	Enhancers	Brain Substantia Nigra	brain
4	chr11:83252800-83258200	Enhancers	Fetal Intestine Large	intestine
5	chr11:83253600-83258000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:83255600-83261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:83256000-83261400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:83256200-83259200	Weak transcription	Hela-S3	cervix
9	chr11:83256200-83261400	Weak transcription	NHEK	skin
10	chr11:83256800-83257800	Enhancers	Fetal Brain Male	brain
11	chr11:83257200-83265600	Weak transcription	Fetal Stomach	stomach
12	chr11:83257400-83260000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:83257400-83261600	Weak transcription	Fetal Lung	lung
14	chr11:83257600-83258000	Weak transcription	Brain Anterior Caudate	brain
15	chr11:83257600-83258600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:83257600-83261000	Weak transcription	Brain Angular Gyrus	brain
17	chr11:83257600-83261200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:83257600-83261200	Weak transcription	Brain Germinal Matrix	brain

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