Variant report

Variant	rs3815987
Chromosome Location	chr11:83183005-83183006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1075718	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10792688	0.92[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs10792689	0.86[EUR][1000 genomes]
rs10898119	0.80[ASN][1000 genomes]
rs10898121	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10898126	0.88[CEU][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes]
rs10898127	0.84[CEU][hapmap];0.84[MEX][hapmap]
rs10898129	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10898135	0.86[EUR][1000 genomes]
rs11233632	0.82[CEU][hapmap]
rs11233649	0.84[MEX][hapmap];0.81[TSI][hapmap]
rs11233664	0.89[EUR][1000 genomes]
rs11523976	0.80[AMR][1000 genomes]
rs11607886	0.84[CEU][hapmap]
rs12294291	0.87[CEU][hapmap]
rs1347008	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1367984	0.91[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs1367985	0.92[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs1432052	0.87[CEU][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs1432053	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1432054	0.92[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs1432058	0.96[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1465670	0.86[EUR][1000 genomes]
rs1465671	0.92[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs1469609	0.88[CEU][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes]
rs1469610	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs1835764	0.84[EUR][1000 genomes]
rs1864774	0.87[CEU][hapmap]
rs1897372	0.83[CEU][hapmap]
rs1943748	0.80[AMR][1000 genomes]
rs1943749	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2009715	0.87[CEU][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2116483	0.92[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs2116484	0.86[EUR][1000 genomes]
rs2163612	0.85[ASW][hapmap];1.00[YRI][hapmap]
rs2195801	0.96[CEU][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2374424	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2507849	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2507852	0.80[AMR][1000 genomes]
rs2507860	0.80[ASN][1000 genomes]
rs2507861	0.80[ASN][1000 genomes]
rs2507865	0.81[ASN][1000 genomes]
rs2507867	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2510471	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2510473	0.80[ASN][1000 genomes]
rs2510474	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2510475	0.80[ASN][1000 genomes]
rs2510476	0.80[AMR][1000 genomes]
rs2510477	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2510478	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2510479	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2512657	0.81[ASN][1000 genomes]
rs2512659	0.81[ASN][1000 genomes]
rs2512661	0.80[ASN][1000 genomes]
rs2512663	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2512666	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2512670	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2512677	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2512681	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2512682	0.80[AMR][1000 genomes]
rs2512685	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2512688	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2512690	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2512691	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2846424	0.91[YRI][hapmap]
rs3815986	0.84[CEU][hapmap]
rs3815988	0.96[CEU][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4399351	0.91[CEU][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs4547114	0.92[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs472415	0.83[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs494791	0.88[GIH][hapmap];0.83[YRI][hapmap]
rs500059	0.83[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs500571	0.81[GIH][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap]
rs505621	0.82[CEU][hapmap]
rs505998	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs566703	0.88[YRI][hapmap]
rs6592116	0.84[CEU][hapmap]
rs6592122	0.86[EUR][1000 genomes]
rs6592123	0.92[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs6592124	0.87[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs662545	0.82[EUR][1000 genomes]
rs666845	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs671991	1.00[YRI][hapmap]
rs684857	0.83[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap]
rs7113026	0.86[EUR][1000 genomes]
rs7113293	0.86[EUR][1000 genomes]
rs7116058	0.87[EUR][1000 genomes]
rs7122339	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7131385	0.85[CEU][hapmap]
rs7927629	0.84[CEU][hapmap]
rs7928920	0.86[EUR][1000 genomes]
rs7930252	0.92[CEU][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs7934399	0.86[EUR][1000 genomes]
rs919667	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958246	0.88[CEU][hapmap]
rs9634001	0.88[EUR][1000 genomes]
rs999429	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3815987	CCDC90B	Cis_1M	lymphoblastoid	RTeQTL
rs3815987	EED	cis	parietal	SCAN
rs3815987	CCDC90B	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83167400-83183200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:83169200-83183400	Weak transcription	Ovary	ovary
3	chr11:83170600-83186800	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83171400-83183200	Weak transcription	Fetal Stomach	stomach
5	chr11:83175600-83183600	Weak transcription	Brain Angular Gyrus	brain
6	chr11:83176000-83184000	Weak transcription	Liver	Liver
7	chr11:83182200-83185000	Enhancers	Fetal Lung	lung
8	chr11:83182600-83183800	Enhancers	Brain Hippocampus Middle	brain
9	chr11:83182800-83183400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:83182800-83184000	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:83182800-83184000	Enhancers	Fetal Kidney	kidney
12	chr11:83183000-83183400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:83183000-83183800	Enhancers	Brain Anterior Caudate	brain

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