Variant report

Variant	rs7122339
Chromosome Location	chr11:83239672-83239673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1075718	0.89[EUR][1000 genomes]
rs10792688	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10792689	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898129	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898135	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233664	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1347008	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1367984	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1367985	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1432052	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1432053	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1432054	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1432056	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1432058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465670	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1465671	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1835764	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2009715	0.81[EUR][1000 genomes]
rs2116483	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2116484	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2195801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2507849	0.83[EUR][1000 genomes]
rs2512663	0.82[EUR][1000 genomes]
rs2512670	0.83[EUR][1000 genomes]
rs3815987	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3815988	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4303248	0.82[ASN][1000 genomes]
rs4399351	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4547114	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs472415	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs478946	0.81[EUR][1000 genomes]
rs492607	0.81[EUR][1000 genomes]
rs500059	0.81[EUR][1000 genomes]
rs500328	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs505621	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs512556	0.81[EUR][1000 genomes]
rs556199	0.83[ASN][1000 genomes]
rs6592122	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592123	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592124	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs662545	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs683250	0.83[ASN][1000 genomes]
rs7113026	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7113293	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7116058	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7928920	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7930252	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7934399	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs919667	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9634001	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7122339	CCDC90B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83233400-83250800	Weak transcription	Hela-S3	cervix
2	chr11:83235000-83244200	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83235200-83251000	Weak transcription	Brain Anterior Caudate	brain
4	chr11:83235200-83251200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83235200-83251200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83235200-83251400	Weak transcription	Brain Angular Gyrus	brain
7	chr11:83235800-83244400	Weak transcription	Brain Substantia Nigra	brain
8	chr11:83238000-83240200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:83238400-83240400	Enhancers	Liver	Liver
10	chr11:83239000-83241000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:83239400-83239800	Enhancers	Fetal Lung	lung

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