Variant report

Variant	rs505998
Chromosome Location	chr11:83315597-83315598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1075718	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs10792688	0.91[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap]
rs10898126	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs10898127	0.86[TSI][hapmap]
rs11233649	0.88[TSI][hapmap]
rs1228632	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12294291	0.83[CEU][hapmap]
rs1367984	0.91[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1367985	0.91[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap]
rs1367987	0.80[CHB][hapmap]
rs1432052	0.86[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs1432053	0.91[CEU][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap]
rs1432054	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs1432056	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1432058	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap]
rs1465671	0.91[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap]
rs1469609	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs2009715	0.83[CEU][hapmap];0.90[TSI][hapmap]
rs2116483	0.91[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap]
rs2195801	0.87[CEU][hapmap];0.83[CHB][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap]
rs2436152	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs2508720	0.96[CEU][hapmap]
rs3815986	0.81[TSI][hapmap]
rs3815987	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs3815988	0.87[CEU][hapmap];0.83[CHB][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap]
rs4303248	0.85[EUR][1000 genomes]
rs4399351	0.90[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4547114	0.91[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs472415	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs473255	0.96[CEU][hapmap]
rs477046	1.00[ASW][hapmap];0.87[CEU][hapmap];0.86[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs478048	0.85[ASW][hapmap];0.91[CEU][hapmap];0.86[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs478946	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs483020	0.95[CEU][hapmap]
rs488600	0.96[CEU][hapmap];0.80[TSI][hapmap]
rs492607	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs494071	0.96[CEU][hapmap];0.80[CHD][hapmap];0.80[TSI][hapmap]
rs495946	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs500059	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs500328	0.91[EUR][1000 genomes]
rs500359	0.96[CEU][hapmap]
rs500571	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs501139	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs501473	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs505564	0.87[EUR][1000 genomes]
rs505621	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs506718	0.95[CEU][hapmap]
rs511740	0.85[ASW][hapmap];0.87[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs512556	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs513020	0.96[CEU][hapmap];0.80[TSI][hapmap]
rs518143	0.87[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs523494	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs531531	0.96[CEU][hapmap];0.80[TSI][hapmap]
rs533209	0.96[CEU][hapmap];0.80[TSI][hapmap]
rs535809	0.96[CEU][hapmap];0.80[TSI][hapmap]
rs553935	0.92[CEU][hapmap];0.84[TSI][hapmap]
rs556199	0.87[EUR][1000 genomes]
rs558426	0.96[CEU][hapmap];0.80[TSI][hapmap]
rs575952	0.96[CEU][hapmap]
rs579420	0.92[CEU][hapmap]
rs581178	0.95[CEU][hapmap]
rs582207	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs583944	0.92[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.80[TSI][hapmap]
rs585240	0.87[CEU][hapmap]
rs590014	0.96[CEU][hapmap];0.80[TSI][hapmap]
rs598934	0.91[CEU][hapmap]
rs600570	0.96[CEU][hapmap];0.80[TSI][hapmap]
rs601826	0.96[CEU][hapmap];0.80[TSI][hapmap]
rs603174	0.95[CEU][hapmap]
rs605303	0.95[CEU][hapmap]
rs605825	0.95[CEU][hapmap]
rs611766	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs630105	0.95[CEU][hapmap]
rs631277	0.96[CEU][hapmap]
rs633191	0.96[CEU][hapmap]
rs634368	0.90[CEU][hapmap]
rs641838	0.95[CEU][hapmap];0.90[TSI][hapmap]
rs646014	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs654442	0.81[EUR][1000 genomes]
rs656537	0.81[EUR][1000 genomes]
rs6592120	0.81[CHB][hapmap]
rs6592123	0.91[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap]
rs6592124	0.86[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs661927	0.95[CEU][hapmap]
rs662545	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs662966	0.96[CEU][hapmap]
rs663399	0.96[CEU][hapmap];0.80[TSI][hapmap]
rs666845	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs667730	0.95[CEU][hapmap]
rs668625	0.81[EUR][1000 genomes]
rs671321	0.96[CEU][hapmap]
rs67878169	0.81[EUR][1000 genomes]
rs683250	0.87[EUR][1000 genomes]
rs684729	0.87[CEU][hapmap]
rs684857	0.92[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs694613	0.92[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs7930252	0.91[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs919667	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs958246	0.83[CEU][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83312000-83315600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:83312000-83318800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83312000-83320400	Weak transcription	Brain Anterior Caudate	brain
4	chr11:83313800-83319600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:83314000-83315600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83314000-83320200	Weak transcription	Fetal Brain Female	brain
7	chr11:83314200-83318600	Weak transcription	Brain Substantia Nigra	brain
8	chr11:83315000-83316000	Enhancers	Fetal Brain Male	brain
9	chr11:83315000-83318600	Weak transcription	Brain Cingulate Gyrus	brain

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