Variant report

Variant	rs518143
Chromosome Location	chr11:83335764-83335765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83333082..83335940-chr11:83337956..83341610,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10792688	0.81[JPT][hapmap]
rs1228632	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233917	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1367984	0.82[JPT][hapmap]
rs1367985	0.81[JPT][hapmap]
rs1432052	0.86[JPT][hapmap]
rs1432053	0.84[JPT][hapmap]
rs1432054	0.82[JPT][hapmap]
rs1432056	0.87[AFR][1000 genomes]
rs1465671	0.81[JPT][hapmap]
rs2116483	0.81[JPT][hapmap]
rs2436152	0.80[CEU][hapmap]
rs2508720	0.80[CEU][hapmap]
rs4399351	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs4547114	0.82[JPT][hapmap]
rs472415	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs473255	0.80[CEU][hapmap]
rs477046	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs478048	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs478946	0.81[AFR][1000 genomes]
rs492607	0.87[AFR][1000 genomes]
rs495946	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs500059	0.87[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs500359	0.80[CEU][hapmap]
rs500571	0.95[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs501473	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs505621	0.87[CEU][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs505998	0.87[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs511740	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs523494	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs553935	0.84[CEU][hapmap]
rs575952	0.80[CEU][hapmap]
rs582207	0.86[CEU][hapmap]
rs583944	0.84[CEU][hapmap]
rs585240	0.81[CEU][hapmap]
rs598934	0.84[CEU][hapmap]
rs611766	0.85[CEU][hapmap]
rs630105	0.82[CEU][hapmap]
rs631277	0.80[CEU][hapmap]
rs633191	0.80[CEU][hapmap]
rs634368	0.91[CEU][hapmap];0.80[CHB][hapmap]
rs646014	0.86[AFR][1000 genomes]
rs6592123	0.81[JPT][hapmap]
rs6592124	0.82[JPT][hapmap]
rs666845	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs684729	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs684857	0.87[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs694613	0.84[CEU][hapmap]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83324200-83341200	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83324400-83340400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83335400-83335800	Enhancers	Brain Germinal Matrix	brain
4	chr11:83335400-83336000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:83335400-83336200	Enhancers	NHEK	skin
6	chr11:83335400-83336400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:83335600-83335800	Enhancers	Brain Substantia Nigra	brain
8	chr11:83335600-83336600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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