Variant report

Variant	rs523494
Chromosome Location	chr11:83312379-83312380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83306213..83308073-chr11:83310523..83313499,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1228632	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1432056	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2436152	0.80[EUR][1000 genomes]
rs4303248	0.85[EUR][1000 genomes]
rs472415	0.86[EUR][1000 genomes]
rs478048	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs478946	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs492607	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs495946	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs500059	0.90[EUR][1000 genomes]
rs500328	0.91[EUR][1000 genomes]
rs500571	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs501473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs505564	0.87[EUR][1000 genomes]
rs505621	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs505998	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs511740	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs512556	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs518143	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs556199	0.87[EUR][1000 genomes]
rs582207	0.80[EUR][1000 genomes]
rs611766	0.80[EUR][1000 genomes]
rs646014	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs654442	0.80[EUR][1000 genomes]
rs656537	0.80[EUR][1000 genomes]
rs662545	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs666845	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs668625	0.80[EUR][1000 genomes]
rs67878169	0.81[EUR][1000 genomes]
rs683250	0.87[EUR][1000 genomes]
rs684857	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs694613	0.80[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83309000-83314600	Enhancers	Fetal Brain Male	brain
2	chr11:83311000-83312400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:83311000-83312400	Enhancers	Fetal Brain Female	brain
4	chr11:83311800-83312400	Enhancers	Brain Substantia Nigra	brain
5	chr11:83311800-83312800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:83311800-83313600	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:83312000-83313000	Weak transcription	Pancreas	Pancrea
8	chr11:83312000-83313400	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:83312000-83313400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:83312000-83315600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:83312000-83318800	Weak transcription	Brain Angular Gyrus	brain
12	chr11:83312000-83320400	Weak transcription	Brain Anterior Caudate	brain

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