Variant report

Variant	rs478048
Chromosome Location	chr11:83324320-83324321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83320562..83322405-chr11:83324289..83326675,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10792688	0.83[CEU][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap]
rs10898126	0.81[TSI][hapmap]
rs10898127	0.86[TSI][hapmap]
rs11233649	0.83[TSI][hapmap]
rs1228632	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233917	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1367984	0.82[CEU][hapmap];0.91[JPT][hapmap]
rs1367985	0.83[CEU][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap]
rs1432052	0.95[JPT][hapmap]
rs1432053	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs1432054	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs1432056	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1432058	0.86[JPT][hapmap]
rs1465671	0.83[CEU][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap]
rs1469609	0.81[TSI][hapmap]
rs2009715	0.85[TSI][hapmap]
rs2116483	0.83[CEU][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap]
rs2195801	0.86[JPT][hapmap];0.85[TSI][hapmap]
rs2436152	0.83[CEU][hapmap]
rs2436154	0.85[EUR][1000 genomes]
rs2508720	0.83[CEU][hapmap]
rs3815986	0.81[TSI][hapmap]
rs3815988	0.86[JPT][hapmap];0.85[TSI][hapmap]
rs4399351	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs4547114	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs472415	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs473255	0.83[CEU][hapmap]
rs477046	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs478946	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs483020	0.83[CEU][hapmap]
rs488600	0.83[CEU][hapmap]
rs492607	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs494071	0.83[CEU][hapmap]
rs495946	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs500059	0.91[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs500328	0.82[EUR][1000 genomes]
rs500359	0.83[CEU][hapmap]
rs500571	0.85[ASW][hapmap];0.95[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs501473	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs505621	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs505998	0.85[ASW][hapmap];0.91[CEU][hapmap];0.86[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs506718	0.83[CEU][hapmap]
rs511740	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs512556	0.81[EUR][1000 genomes]
rs513020	0.83[CEU][hapmap]
rs518143	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs523494	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs531531	0.83[CEU][hapmap]
rs533209	0.83[CEU][hapmap]
rs535809	0.83[CEU][hapmap]
rs553935	0.88[CEU][hapmap]
rs558426	0.83[CEU][hapmap]
rs575952	0.83[CEU][hapmap]
rs581178	0.82[CEU][hapmap]
rs582207	0.90[CEU][hapmap]
rs583944	0.88[CEU][hapmap]
rs585240	0.84[CEU][hapmap]
rs590014	0.83[CEU][hapmap]
rs598934	0.88[CEU][hapmap]
rs600570	0.83[CEU][hapmap]
rs601826	0.83[CEU][hapmap]
rs603174	0.83[CEU][hapmap]
rs605303	0.83[CEU][hapmap]
rs605825	0.82[CEU][hapmap]
rs611766	0.88[CEU][hapmap]
rs630105	0.86[CEU][hapmap]
rs631277	0.83[CEU][hapmap]
rs633191	0.83[CEU][hapmap]
rs634368	0.95[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs641838	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs646014	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6592123	0.83[CEU][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap]
rs6592124	0.91[JPT][hapmap]
rs661927	0.83[CEU][hapmap]
rs662966	0.83[CEU][hapmap]
rs663399	0.83[CEU][hapmap]
rs666845	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs667730	0.83[CEU][hapmap]
rs671321	0.83[CEU][hapmap]
rs684729	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs684857	0.91[CEU][hapmap];0.83[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs694613	0.88[CEU][hapmap]
rs7930252	0.83[CEU][hapmap];0.86[JPT][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83318400-83324400	Enhancers	Fetal Brain Male	brain
2	chr11:83321800-83324400	Enhancers	Hela-S3	cervix
3	chr11:83322200-83325200	Enhancers	Brain Cingulate Gyrus	brain
4	chr11:83322200-83325200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr11:83322600-83324600	Enhancers	Brain Hippocampus Middle	brain
6	chr11:83322600-83325000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:83322600-83325000	Enhancers	Brain Substantia Nigra	brain
8	chr11:83322600-83326000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:83322800-83324400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:83322800-83325200	Enhancers	Brain Angular Gyrus	brain
11	chr11:83323600-83324400	Enhancers	Fetal Brain Female	brain
12	chr11:83323600-83324600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:83323800-83324400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:83323800-83324400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr11:83323800-83324400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:83323800-83324400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:83323800-83324400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:83323800-83324400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr11:83323800-83324400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr11:83323800-83324400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr11:83323800-83324600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr11:83323800-83325200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:83323800-83328200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:83324000-83324400	Enhancers	H9 Cell Line	embryonic stem cell
25	chr11:83324000-83324400	Flanking Active TSS	GM12878-XiMat	blood
26	chr11:83324200-83324400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:83324200-83341200	Weak transcription	Brain Anterior Caudate	brain

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