Variant report

Variant	rs958246
Chromosome Location	chr11:83185861-83185862
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83162357..83164289-chr11:83184608..83187226,3	K562	blood:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10501540	0.85[JPT][hapmap]
rs10751093	0.81[JPT][hapmap]
rs1075718	0.88[CEU][hapmap]
rs10792686	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10792688	0.88[CEU][hapmap]
rs10898126	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898127	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11233632	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11233641	0.84[JPT][hapmap]
rs11233649	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233654	0.81[JPT][hapmap]
rs11233657	0.81[JPT][hapmap]
rs11600016	0.86[JPT][hapmap]
rs11601048	0.86[JPT][hapmap]
rs11606666	0.94[JPT][hapmap]
rs11607886	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12294291	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1367978	0.86[JPT][hapmap]
rs1367981	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1367982	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1367984	0.88[CEU][hapmap]
rs1367985	0.88[CEU][hapmap]
rs1432043	0.81[JPT][hapmap]
rs1432044	0.81[JPT][hapmap]
rs1432049	0.81[JPT][hapmap]
rs1432052	0.83[CEU][hapmap]
rs1432053	0.88[CEU][hapmap]
rs1432054	0.88[CEU][hapmap]
rs1432058	0.92[CEU][hapmap]
rs1465671	0.88[CEU][hapmap]
rs1469609	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1469610	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1864774	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1864775	0.85[JPT][hapmap]
rs1897372	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2009715	1.00[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2116483	0.88[CEU][hapmap]
rs2195801	0.92[CEU][hapmap]
rs2374424	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2436152	0.88[CEU][hapmap]
rs2508720	0.88[CEU][hapmap]
rs2512660	0.80[EUR][1000 genomes]
rs3815986	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3815987	0.88[CEU][hapmap]
rs3815988	0.92[CEU][hapmap]
rs4341564	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4399351	0.87[CEU][hapmap]
rs4547114	0.88[CEU][hapmap]
rs472415	0.81[CEU][hapmap]
rs473255	0.88[CEU][hapmap]
rs483020	0.88[CEU][hapmap]
rs488600	0.88[CEU][hapmap]
rs494071	0.88[CEU][hapmap]
rs500359	0.88[CEU][hapmap]
rs505998	0.83[CEU][hapmap]
rs506718	0.87[CEU][hapmap]
rs513020	0.88[CEU][hapmap]
rs531531	0.88[CEU][hapmap]
rs533209	0.88[CEU][hapmap]
rs535809	0.88[CEU][hapmap]
rs553935	0.84[CEU][hapmap]
rs558426	0.88[CEU][hapmap]
rs575952	0.88[CEU][hapmap]
rs579420	0.84[CEU][hapmap]
rs581178	0.87[CEU][hapmap]
rs582207	0.86[CEU][hapmap]
rs583944	0.84[CEU][hapmap]
rs585240	0.84[CEU][hapmap]
rs590014	0.88[CEU][hapmap]
rs598934	0.88[CEU][hapmap]
rs600570	0.88[CEU][hapmap]
rs601826	0.88[CEU][hapmap]
rs603174	0.88[CEU][hapmap]
rs605303	0.88[CEU][hapmap]
rs605825	0.92[CEU][hapmap]
rs611766	0.84[CEU][hapmap]
rs630105	0.87[CEU][hapmap]
rs631277	0.88[CEU][hapmap]
rs633191	0.88[CEU][hapmap]
rs641838	0.87[CEU][hapmap]
rs6592116	0.96[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592117	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592119	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6592123	0.88[CEU][hapmap]
rs6592124	0.83[CEU][hapmap]
rs661927	0.88[CEU][hapmap]
rs662966	0.88[CEU][hapmap]
rs663399	0.88[CEU][hapmap]
rs667730	0.88[CEU][hapmap]
rs671321	0.88[CEU][hapmap]
rs694613	0.84[CEU][hapmap]
rs7127319	0.81[JPT][hapmap]
rs7127859	0.81[JPT][hapmap]
rs7131385	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7927629	0.96[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7930252	0.88[CEU][hapmap]
rs7948931	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs919667	0.88[CEU][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83170600-83186800	Weak transcription	Brain Substantia Nigra	brain
2	chr11:83183600-83186000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:83183600-83192000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:83183800-83187000	Weak transcription	Brain Anterior Caudate	brain
5	chr11:83183800-83191000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:83183800-83191200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:83184000-83187000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:83184000-83187000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:83184200-83187000	Weak transcription	Brain Angular Gyrus	brain
10	chr11:83185600-83187600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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