Variant report

Variant	rs1897373
Chromosome Location	chr11:83282600-83282601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10898136	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1225904	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1225905	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1225906	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1225907	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1228630	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1432056	0.80[EUR][1000 genomes]
rs2248115	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2436151	0.81[EUR][1000 genomes]
rs2436152	0.93[EUR][1000 genomes]
rs2436157	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2436158	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508717	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2508720	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2512689	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4303248	0.80[EUR][1000 genomes]
rs4500510	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4578410	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs473255	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs488600	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs489752	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs491592	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs491633	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs494071	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs500059	0.80[EUR][1000 genomes]
rs500359	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs500578	0.85[EUR][1000 genomes]
rs501139	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs505564	0.84[EUR][1000 genomes]
rs506718	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs512556	0.80[EUR][1000 genomes]
rs513020	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs526787	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs531531	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs533209	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs534325	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs535809	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs536566	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs544159	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs544921	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs553935	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs556199	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs558350	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs558426	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs575952	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs579420	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs581178	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs582207	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs583944	0.91[EUR][1000 genomes]
rs585240	0.91[EUR][1000 genomes]
rs590014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs598934	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs600570	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs601826	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs603174	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs605303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs605825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs611766	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs614398	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs622934	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs625091	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs630105	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs631277	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs633191	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs638692	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs638746	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs641838	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs643835	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs654442	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs656537	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs661927	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs662966	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs663399	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs666845	0.84[EUR][1000 genomes]
rs667730	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs668625	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs671321	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs676038	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs683250	0.84[EUR][1000 genomes]
rs694613	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83278600-83283800	Weak transcription	NHEK	skin
2	chr11:83278600-83283800	Weak transcription	Osteobl	bone
3	chr11:83278600-83284800	Weak transcription	HSMMtube	muscle
4	chr11:83278600-83284800	Weak transcription	NHLF	lung
5	chr11:83278800-83283600	Weak transcription	NHDF-Ad	bronchial
6	chr11:83278800-83284400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:83279000-83283600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:83279000-83283800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:83279000-83289800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:83279200-83291200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:83279400-83283600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:83279400-83284800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:83280800-83282600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:83281000-83283600	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:83281000-83285800	Weak transcription	Brain Angular Gyrus	brain
16	chr11:83281200-83282600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:83281200-83283600	Weak transcription	Brain Substantia Nigra	brain
18	chr11:83281200-83284400	Weak transcription	Brain Anterior Caudate	brain
19	chr11:83281200-83284800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:83281200-83286800	Enhancers	Hela-S3	cervix
21	chr11:83282200-83283800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:83282400-83282600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr11:83282600-83282800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:83282600-83283000	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr11:83282600-83286200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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