Variant report

Variant	rs11233663
Chromosome Location	chr11:83253407-83253408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10501540	0.95[CEU][hapmap]
rs10751093	0.95[CEU][hapmap];0.83[JPT][hapmap]
rs10792688	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs10898125	0.91[CEU][hapmap]
rs10898133	0.90[CEU][hapmap]
rs10898134	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs11233628	0.90[CEU][hapmap]
rs11233641	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs11233654	0.95[CEU][hapmap];0.83[JPT][hapmap]
rs11233657	0.95[CEU][hapmap];0.83[JPT][hapmap]
rs11233667	0.85[ASN][1000 genomes]
rs11600016	0.91[CEU][hapmap]
rs11601048	0.95[CEU][hapmap]
rs11606666	0.90[CEU][hapmap]
rs12223102	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs12577373	0.90[CEU][hapmap]
rs12794550	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs1367978	0.95[CEU][hapmap]
rs1367984	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs1367985	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1367987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1367988	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1432043	0.86[CEU][hapmap];0.83[JPT][hapmap]
rs1432044	0.86[CEU][hapmap];0.83[JPT][hapmap]
rs1432049	0.91[CEU][hapmap];0.83[JPT][hapmap]
rs1432052	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1432054	0.84[JPT][hapmap]
rs1432057	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[YRI][hapmap];0.90[ASN][1000 genomes]
rs1432058	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs1465668	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465671	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1864775	0.90[CEU][hapmap]
rs2116483	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs2195801	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs3793945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3793946	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3815988	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs4316529	1.00[CEU][hapmap];0.95[CHB][hapmap];0.80[YRI][hapmap];0.90[ASN][1000 genomes]
rs4399351	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs4494323	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[YRI][hapmap];0.90[ASN][1000 genomes]
rs4547114	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs472415	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs516344	0.82[CEU][hapmap];0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs516435	0.82[CEU][hapmap];0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs541133	0.82[CEU][hapmap]
rs543068	0.85[ASN][1000 genomes]
rs548327	0.81[CEU][hapmap]
rs574361	0.82[CEU][hapmap];0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs645427	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs656727	0.85[ASN][1000 genomes]
rs658438	0.85[ASN][1000 genomes]
rs6592120	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592123	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs6592124	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs659427	0.85[ASN][1000 genomes]
rs676115	0.82[CEU][hapmap]
rs694847	0.85[ASN][1000 genomes]
rs7113167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116939	0.90[CEU][hapmap]
rs7127319	0.91[CEU][hapmap];0.83[JPT][hapmap]
rs7127859	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs7924348	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[YRI][hapmap];0.89[ASN][1000 genomes]
rs7926588	0.81[CEU][hapmap];0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs7927435	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928931	0.90[CEU][hapmap];0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs7930252	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs7939707	0.85[ASN][1000 genomes]
rs7940037	0.85[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83245200-83255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:83250000-83253600	Weak transcription	Psoas Muscle	Psoas
3	chr11:83251000-83257600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:83251000-83257600	Enhancers	Brain Anterior Caudate	brain
5	chr11:83251000-83258200	Enhancers	Brain Hippocampus Middle	brain
6	chr11:83251200-83257400	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:83251200-83258200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:83251400-83255200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:83251400-83255600	Enhancers	Fetal Brain Male	brain
10	chr11:83251400-83257600	Enhancers	Brain Angular Gyrus	brain
11	chr11:83251600-83253600	Weak transcription	Fetal Brain Female	brain
12	chr11:83251600-83255400	Weak transcription	Small Intestine	intestine
13	chr11:83251600-83258200	Enhancers	Brain Substantia Nigra	brain
14	chr11:83251800-83254000	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:83252000-83253600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:83252000-83254200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:83252000-83254400	Weak transcription	Fetal Stomach	stomach
18	chr11:83252600-83256600	Weak transcription	Fetal Lung	lung
19	chr11:83252800-83254600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:83252800-83258200	Enhancers	Fetal Intestine Large	intestine
21	chr11:83253000-83254000	Weak transcription	Hela-S3	cervix
22	chr11:83253200-83254400	Weak transcription	Fetal Intestine Small	intestine

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