Variant report

Variant	rs658438
Chromosome Location	chr11:83262376-83262377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10898134	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11233663	0.85[ASN][1000 genomes]
rs11233667	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432057	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1465668	0.85[ASN][1000 genomes]
rs2436156	0.83[EUR][1000 genomes]
rs3793945	0.81[ASN][1000 genomes]
rs4316529	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4494323	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs516344	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs516435	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535755	0.81[EUR][1000 genomes]
rs541133	0.83[EUR][1000 genomes]
rs543068	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546557	0.83[EUR][1000 genomes]
rs548327	0.81[EUR][1000 genomes]
rs560846	0.81[EUR][1000 genomes]
rs571331	0.83[EUR][1000 genomes]
rs574361	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61902066	0.84[EUR][1000 genomes]
rs645427	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656727	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592120	0.81[ASN][1000 genomes]
rs6592125	0.89[ASN][1000 genomes]
rs659427	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671313	0.83[EUR][1000 genomes]
rs694847	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113167	0.85[ASN][1000 genomes]
rs7924348	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7926588	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7927435	0.85[ASN][1000 genomes]
rs7928931	0.91[ASN][1000 genomes]
rs7939707	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940037	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83257200-83265600	Weak transcription	Fetal Stomach	stomach
2	chr11:83260000-83262600	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:83260200-83262400	Enhancers	Brain Hippocampus Middle	brain
4	chr11:83261000-83262800	Enhancers	Brain Angular Gyrus	brain
5	chr11:83261400-83262600	Enhancers	Fetal Heart	heart
6	chr11:83261600-83263200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:83261600-83266000	Weak transcription	Brain Anterior Caudate	brain
8	chr11:83261800-83265800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:83261800-83277200	Weak transcription	Hela-S3	cervix
10	chr11:83262200-83262800	Enhancers	Fetal Lung	lung
11	chr11:83262200-83266200	Weak transcription	Brain Substantia Nigra	brain

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