Variant report

Variant	rs645427
Chromosome Location	chr11:83261851-83261852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10792688	0.83[CHB][hapmap]
rs10898134	0.84[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11233663	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs11233667	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367984	0.83[CHB][hapmap]
rs1367985	0.83[CHB][hapmap]
rs1367987	0.86[CHB][hapmap]
rs1432052	0.83[CHB][hapmap]
rs1432057	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432058	0.83[CHB][hapmap]
rs1465668	0.85[ASN][1000 genomes]
rs1465671	0.83[CHB][hapmap]
rs2116483	0.83[CHB][hapmap]
rs2195801	0.83[CHB][hapmap]
rs2436156	0.92[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs3793945	0.81[CEU][hapmap];0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs3793946	0.81[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap]
rs3815988	0.83[CHB][hapmap]
rs4316529	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4399351	0.83[CHB][hapmap]
rs4494323	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4547114	0.83[CHB][hapmap]
rs472415	0.87[CHB][hapmap]
rs485199	0.81[CEU][hapmap]
rs489567	0.85[CEU][hapmap]
rs494303	0.92[CEU][hapmap]
rs500571	0.82[CHB][hapmap]
rs515618	0.92[CEU][hapmap]
rs516344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs516435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs532467	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs541133	0.92[CEU][hapmap];0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs543068	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546557	0.92[CEU][hapmap];0.90[CHB][hapmap];0.80[EUR][1000 genomes]
rs548327	0.96[CEU][hapmap]
rs551108	0.84[CEU][hapmap]
rs558211	0.92[CEU][hapmap];0.86[TSI][hapmap]
rs561890	0.96[CEU][hapmap];0.90[CHB][hapmap]
rs571331	0.92[CEU][hapmap];0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs574361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591422	0.92[CEU][hapmap]
rs61902066	0.81[EUR][1000 genomes]
rs635823	0.89[CEU][hapmap]
rs651491	0.81[CEU][hapmap]
rs653546	0.89[CEU][hapmap];0.86[TSI][hapmap]
rs656727	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs658438	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592120	0.82[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs6592123	0.83[CHB][hapmap]
rs6592124	0.83[CHB][hapmap]
rs6592125	0.89[ASN][1000 genomes]
rs659427	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs666845	0.82[CHB][hapmap]
rs671313	0.92[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs676115	0.96[CEU][hapmap]
rs684857	0.82[CHB][hapmap]
rs688997	0.81[CEU][hapmap]
rs694847	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113167	0.81[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs7924348	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7926588	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7927435	0.85[ASN][1000 genomes]
rs7928931	0.82[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];0.80[JPT][hapmap];0.91[ASN][1000 genomes]
rs7930252	0.83[CHB][hapmap]
rs7939707	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940037	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs645427	TMEM135	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83257200-83265600	Weak transcription	Fetal Stomach	stomach
2	chr11:83260000-83262600	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:83260200-83262400	Enhancers	Brain Hippocampus Middle	brain
4	chr11:83261000-83262800	Enhancers	Brain Angular Gyrus	brain
5	chr11:83261400-83262000	Enhancers	NHEK	skin
6	chr11:83261400-83262600	Enhancers	Fetal Heart	heart
7	chr11:83261600-83263200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:83261600-83266000	Weak transcription	Brain Anterior Caudate	brain
9	chr11:83261800-83262200	Enhancers	Brain Substantia Nigra	brain
10	chr11:83261800-83262200	Weak transcription	Fetal Lung	lung
11	chr11:83261800-83265800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:83261800-83277200	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links