Variant report

Variant	rs7928931
Chromosome Location	chr11:83260621-83260622
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10501540	0.88[CEU][hapmap]
rs10751093	0.88[CEU][hapmap]
rs10898125	0.83[CEU][hapmap]
rs10898133	0.84[CEU][hapmap]
rs10898134	0.88[CEU][hapmap];0.87[CHB][hapmap];0.84[ASN][1000 genomes]
rs11233628	0.84[CEU][hapmap]
rs11233641	0.87[CEU][hapmap]
rs11233654	0.88[CEU][hapmap]
rs11233657	0.88[CEU][hapmap]
rs11233663	0.90[CEU][hapmap];0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs11233667	0.91[ASN][1000 genomes]
rs11600016	0.84[CEU][hapmap]
rs11601048	0.88[CEU][hapmap]
rs11606666	0.81[CEU][hapmap]
rs12223102	0.88[CEU][hapmap]
rs12794550	0.88[CEU][hapmap]
rs1367978	0.88[CEU][hapmap]
rs1367987	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs1432043	0.81[CEU][hapmap]
rs1432044	0.81[CEU][hapmap]
rs1432049	0.84[CEU][hapmap]
rs1432057	0.89[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.90[ASN][1000 genomes]
rs1465668	0.81[ASN][1000 genomes]
rs1465669	0.85[EUR][1000 genomes]
rs1864775	0.83[CEU][hapmap]
rs2436156	0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[LWK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3793945	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs3793946	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap]
rs4316529	0.89[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap];0.90[ASN][1000 genomes]
rs4494323	0.88[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.90[ASN][1000 genomes]
rs494303	0.88[CEU][hapmap];0.92[YRI][hapmap]
rs515618	0.89[CEU][hapmap];0.83[LWK][hapmap];0.92[YRI][hapmap]
rs516344	0.81[CEU][hapmap];0.86[CHB][hapmap];0.91[ASN][1000 genomes]
rs516435	0.82[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap];0.91[ASN][1000 genomes]
rs532467	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs541133	0.92[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs543068	0.91[ASN][1000 genomes]
rs546557	0.88[CEU][hapmap];0.89[CHB][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs548327	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs551108	0.81[CEU][hapmap];0.92[YRI][hapmap]
rs558211	0.89[CEU][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap]
rs561890	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs571331	0.89[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs574361	0.81[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap];0.91[ASN][1000 genomes]
rs591422	0.89[CEU][hapmap];0.92[YRI][hapmap]
rs60824635	0.82[EUR][1000 genomes]
rs61902066	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs635823	0.84[CEU][hapmap];0.92[YRI][hapmap]
rs645427	0.82[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];0.80[JPT][hapmap];0.91[ASN][1000 genomes]
rs653546	0.84[CEU][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap]
rs656727	0.91[ASN][1000 genomes]
rs658438	0.91[ASN][1000 genomes]
rs6592120	0.81[CEU][hapmap];0.82[CHD][hapmap]
rs6592125	0.81[ASN][1000 genomes]
rs659427	0.91[ASN][1000 genomes]
rs671313	0.88[CEU][hapmap];0.86[CHB][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs676115	0.92[CEU][hapmap]
rs694847	0.91[ASN][1000 genomes]
rs7109050	0.83[EUR][1000 genomes]
rs7113167	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs7116939	0.84[CEU][hapmap]
rs7127319	0.84[CEU][hapmap]
rs7924348	0.89[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap];0.90[ASN][1000 genomes]
rs7926588	0.82[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.80[JPT][hapmap];0.90[ASN][1000 genomes]
rs7927435	0.81[ASN][1000 genomes]
rs7939707	0.91[ASN][1000 genomes]
rs7940037	0.91[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83255600-83261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:83256000-83261400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:83256200-83261400	Weak transcription	NHEK	skin
4	chr11:83257200-83265600	Weak transcription	Fetal Stomach	stomach
5	chr11:83257400-83261600	Weak transcription	Fetal Lung	lung
6	chr11:83257600-83261000	Weak transcription	Brain Angular Gyrus	brain
7	chr11:83257600-83261200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:83257600-83261200	Weak transcription	Brain Germinal Matrix	brain
9	chr11:83258200-83261200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:83258200-83261800	Weak transcription	Brain Substantia Nigra	brain
11	chr11:83259200-83261800	Enhancers	Hela-S3	cervix
12	chr11:83260000-83262600	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:83260200-83261200	Weak transcription	Brain Anterior Caudate	brain
14	chr11:83260200-83262400	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links