Variant report

Variant	rs61902066
Chromosome Location	chr11:83261268-83261269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10792690	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11233667	0.84[EUR][1000 genomes]
rs1465669	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2436156	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs493431	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs494303	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs515618	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs516344	0.84[EUR][1000 genomes]
rs516435	0.83[EUR][1000 genomes]
rs532467	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs535755	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs541133	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs543068	0.84[EUR][1000 genomes]
rs543147	0.80[EUR][1000 genomes]
rs546557	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs548327	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs558211	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs560846	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs561890	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs571331	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs574361	0.84[EUR][1000 genomes]
rs591422	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60824635	0.82[EUR][1000 genomes]
rs645427	0.81[EUR][1000 genomes]
rs653546	0.85[EUR][1000 genomes]
rs656727	0.84[EUR][1000 genomes]
rs658438	0.84[EUR][1000 genomes]
rs659427	0.84[EUR][1000 genomes]
rs666675	0.84[EUR][1000 genomes]
rs671313	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs676115	0.85[EUR][1000 genomes]
rs684110	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs694847	0.84[EUR][1000 genomes]
rs7109050	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7926588	0.84[EUR][1000 genomes]
rs7928931	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7939707	0.80[EUR][1000 genomes]
rs7940037	0.84[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83256000-83261400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:83256200-83261400	Weak transcription	NHEK	skin
3	chr11:83257200-83265600	Weak transcription	Fetal Stomach	stomach
4	chr11:83257400-83261600	Weak transcription	Fetal Lung	lung
5	chr11:83258200-83261800	Weak transcription	Brain Substantia Nigra	brain
6	chr11:83259200-83261800	Enhancers	Hela-S3	cervix
7	chr11:83260000-83262600	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:83260200-83262400	Enhancers	Brain Hippocampus Middle	brain
9	chr11:83261000-83261800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:83261000-83262800	Enhancers	Brain Angular Gyrus	brain
11	chr11:83261200-83261600	Enhancers	Brain Anterior Caudate	brain
12	chr11:83261200-83261600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:83261200-83261800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:83261200-83261800	Enhancers	Brain Germinal Matrix	brain

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