Variant report

Variant	rs541133
Chromosome Location	chr11:83262070-83262071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10501540	0.80[CEU][hapmap]
rs10751093	0.81[CEU][hapmap]
rs10792690	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898134	0.81[CEU][hapmap]
rs11233628	0.82[JPT][hapmap]
rs11233654	0.81[CEU][hapmap]
rs11233657	0.81[CEU][hapmap]
rs11233663	0.82[CEU][hapmap]
rs11233667	0.83[EUR][1000 genomes]
rs11601048	0.81[CEU][hapmap]
rs12223102	0.80[CEU][hapmap]
rs12794550	0.80[CEU][hapmap]
rs1367978	0.81[CEU][hapmap]
rs1432057	0.82[CEU][hapmap]
rs1465669	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2436156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436158	0.82[CHB][hapmap]
rs2508720	0.82[CHB][hapmap]
rs4316529	0.82[CEU][hapmap]
rs4494323	0.81[CEU][hapmap]
rs473255	0.87[CHB][hapmap]
rs483020	0.87[CHB][hapmap]
rs489567	0.85[CEU][hapmap];0.93[JPT][hapmap]
rs493431	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs494303	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs501139	0.86[CHB][hapmap]
rs510978	0.82[JPT][hapmap]
rs513020	0.81[CHB][hapmap]
rs515618	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs516344	0.92[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs516435	0.93[CEU][hapmap];0.83[CHB][hapmap];0.82[EUR][1000 genomes]
rs531531	0.87[CHB][hapmap]
rs532467	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs533209	0.87[CHB][hapmap]
rs535755	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs535809	0.81[CHB][hapmap]
rs543068	0.83[EUR][1000 genomes]
rs543147	0.81[EUR][1000 genomes]
rs546557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs548327	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs551108	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs558211	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs560846	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs561890	0.96[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs571331	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs574361	0.92[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs575952	0.87[CHB][hapmap]
rs581178	0.87[CHB][hapmap]
rs591422	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs600570	0.87[CHB][hapmap]
rs601826	0.87[CHB][hapmap]
rs603174	0.81[CHB][hapmap]
rs605825	0.82[CHB][hapmap]
rs60824635	0.82[EUR][1000 genomes]
rs61902066	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs630105	0.86[CHB][hapmap]
rs631277	0.87[CHB][hapmap]
rs633191	0.82[CHB][hapmap]
rs635823	0.96[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs641838	0.80[CHB][hapmap]
rs645427	0.92[CEU][hapmap];0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs651491	0.81[CEU][hapmap]
rs653546	0.96[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs656727	0.83[EUR][1000 genomes]
rs658438	0.83[EUR][1000 genomes]
rs659427	0.83[EUR][1000 genomes]
rs662966	0.87[CHB][hapmap]
rs663399	0.87[CHB][hapmap]
rs666675	0.84[EUR][1000 genomes]
rs667730	0.82[CHB][hapmap]
rs671313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671321	0.82[CHB][hapmap]
rs676115	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs684110	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs688997	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs694847	0.83[EUR][1000 genomes]
rs7109050	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7116939	0.82[JPT][hapmap]
rs7924348	0.82[CEU][hapmap]
rs7926588	0.92[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs7928931	0.92[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7940037	0.83[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83257200-83265600	Weak transcription	Fetal Stomach	stomach
2	chr11:83260000-83262600	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:83260200-83262400	Enhancers	Brain Hippocampus Middle	brain
4	chr11:83261000-83262800	Enhancers	Brain Angular Gyrus	brain
5	chr11:83261400-83262600	Enhancers	Fetal Heart	heart
6	chr11:83261600-83263200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:83261600-83266000	Weak transcription	Brain Anterior Caudate	brain
8	chr11:83261800-83262200	Enhancers	Brain Substantia Nigra	brain
9	chr11:83261800-83262200	Weak transcription	Fetal Lung	lung
10	chr11:83261800-83265800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:83261800-83277200	Weak transcription	Hela-S3	cervix

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