Variant report

Variant	rs560846
Chromosome Location	chr11:83276533-83276534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10792690	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11233667	0.81[EUR][1000 genomes]
rs11233682	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1465669	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2436156	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs493431	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs494303	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs513710	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs515618	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs516344	0.81[EUR][1000 genomes]
rs516435	0.81[EUR][1000 genomes]
rs532467	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs535755	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs541133	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs543068	0.81[EUR][1000 genomes]
rs543147	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs546557	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs548327	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs551108	0.91[AFR][1000 genomes]
rs558211	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs561890	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs571331	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs574361	0.81[EUR][1000 genomes]
rs591422	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61902066	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs635823	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs653546	0.88[EUR][1000 genomes]
rs656727	0.81[EUR][1000 genomes]
rs658438	0.81[EUR][1000 genomes]
rs659427	0.81[EUR][1000 genomes]
rs666675	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs671313	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs676115	0.88[EUR][1000 genomes]
rs684110	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs694847	0.81[EUR][1000 genomes]
rs7109050	0.82[EUR][1000 genomes]
rs7926588	0.81[EUR][1000 genomes]
rs7940037	0.81[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83261800-83277200	Weak transcription	Hela-S3	cervix
2	chr11:83266400-83278000	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83266600-83278000	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83275800-83276600	Enhancers	Duodenum Mucosa	Duodenum
5	chr11:83276200-83278600	Weak transcription	Brain Substantia Nigra	brain

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