Variant report

Variant	rs548327
Chromosome Location	chr11:83272331-83272332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10792690	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898134	0.80[CEU][hapmap]
rs11233663	0.81[CEU][hapmap]
rs11233667	0.81[EUR][1000 genomes]
rs11233682	0.81[EUR][1000 genomes]
rs1432057	0.80[CEU][hapmap]
rs1465669	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2436152	0.81[CHB][hapmap]
rs2436156	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2436158	0.91[CHB][hapmap]
rs2508720	0.91[CHB][hapmap]
rs4316529	0.80[CEU][hapmap]
rs485199	0.81[JPT][hapmap]
rs488600	0.86[CHB][hapmap]
rs489567	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs493431	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs494071	0.86[CHB][hapmap]
rs494303	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs500359	0.86[CHB][hapmap]
rs506718	0.84[CHB][hapmap]
rs510978	0.87[JPT][hapmap]
rs513020	0.90[CHB][hapmap]
rs513710	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs515618	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs516344	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs516435	0.96[CEU][hapmap]
rs532467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs535755	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs535809	0.90[CHB][hapmap]
rs541133	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs543068	0.81[EUR][1000 genomes]
rs543147	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs546557	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs551108	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs553935	0.85[CHB][hapmap]
rs558211	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs558426	0.86[CHB][hapmap]
rs560846	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs561890	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs571331	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs574361	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs579420	0.86[CHB][hapmap]
rs582207	0.85[CHB][hapmap]
rs583944	0.81[CHB][hapmap]
rs585240	0.86[CHB][hapmap]
rs590014	0.86[CHB][hapmap]
rs591422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs603174	0.90[CHB][hapmap]
rs605303	0.86[CHB][hapmap]
rs605825	0.91[CHB][hapmap]
rs611766	0.86[CHB][hapmap]
rs61902066	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs633191	0.91[CHB][hapmap]
rs635823	0.96[CEU][hapmap];0.95[CHB][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs641838	0.90[CHB][hapmap]
rs645427	0.96[CEU][hapmap]
rs651491	0.84[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap]
rs653546	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes]
rs656727	0.81[EUR][1000 genomes]
rs658438	0.81[EUR][1000 genomes]
rs659427	0.81[EUR][1000 genomes]
rs661927	0.86[CHB][hapmap]
rs666675	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs667730	0.91[CHB][hapmap]
rs671313	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs671321	0.91[CHB][hapmap]
rs676115	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs684110	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs688997	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs694613	0.85[CHB][hapmap]
rs694847	0.81[EUR][1000 genomes]
rs7109050	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7924348	0.80[CEU][hapmap]
rs7926588	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs7928931	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs7940037	0.81[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83261800-83277200	Weak transcription	Hela-S3	cervix
2	chr11:83266400-83278000	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83266600-83275400	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83266600-83278000	Weak transcription	Brain Hippocampus Middle	brain

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