Variant report

Variant	rs551108
Chromosome Location	chr11:83319652-83319653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10792690	0.87[AFR][1000 genomes]
rs2436153	0.87[ASN][1000 genomes]
rs2436155	0.88[ASN][1000 genomes]
rs2436156	0.92[CEU][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs485199	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs489567	0.85[CEU][hapmap];0.80[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs491632	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs494303	0.92[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs506718	0.81[CHB][hapmap]
rs510978	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs513710	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs515618	0.92[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs516344	0.85[CEU][hapmap]
rs516435	0.85[CEU][hapmap]
rs532467	0.92[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap]
rs535755	0.93[AFR][1000 genomes]
rs541133	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs543147	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs546557	0.92[CEU][hapmap];0.87[JPT][hapmap]
rs548327	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs553935	0.82[CHB][hapmap]
rs558211	0.92[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs560846	0.91[AFR][1000 genomes]
rs561890	0.88[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.94[AFR][1000 genomes]
rs571331	0.92[CEU][hapmap]
rs574361	0.85[CEU][hapmap]
rs582207	0.82[CHB][hapmap]
rs585240	0.83[CHB][hapmap]
rs591422	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs611766	0.83[CHB][hapmap]
rs635823	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs645427	0.84[CEU][hapmap]
rs651491	0.89[CEU][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs653546	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs666675	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs671313	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs676115	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs684110	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs688997	0.83[CEU][hapmap]
rs694613	0.82[CHB][hapmap]
rs7926588	0.84[CEU][hapmap]
rs7928931	0.81[CEU][hapmap];0.92[YRI][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83312000-83320400	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83314000-83320200	Weak transcription	Fetal Brain Female	brain
3	chr11:83317000-83320000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:83317000-83322800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:83318400-83324400	Enhancers	Fetal Brain Male	brain
6	chr11:83318600-83321600	Enhancers	Brain Substantia Nigra	brain
7	chr11:83318600-83321800	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:83319200-83322800	Weak transcription	Brain Angular Gyrus	brain
9	chr11:83319600-83322200	Enhancers	Brain Hippocampus Middle	brain

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