Variant report

Variant	rs7113167
Chromosome Location	chr11:83258127-83258128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10501540	0.81[CEU][hapmap]
rs10751093	0.81[CEU][hapmap]
rs10792688	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs10898134	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs11233654	0.81[CEU][hapmap]
rs11233657	0.81[CEU][hapmap]
rs11233663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233667	0.85[ASN][1000 genomes]
rs11601048	0.80[CEU][hapmap]
rs12223102	0.81[CEU][hapmap]
rs12577373	0.80[CEU][hapmap]
rs12794550	0.81[CEU][hapmap]
rs1367978	0.81[CEU][hapmap]
rs1367984	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs1367985	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs1367987	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1367988	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1432052	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs1432054	0.82[JPT][hapmap]
rs1432057	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs1432058	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1465668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465671	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs2116483	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs2195801	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs3793945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3793946	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3815988	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4316529	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs4399351	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs4494323	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.90[ASN][1000 genomes]
rs4547114	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs472415	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs516344	0.86[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs516435	0.81[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs543068	0.85[ASN][1000 genomes]
rs574361	0.81[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs645427	0.81[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs656727	0.85[ASN][1000 genomes]
rs658438	0.85[ASN][1000 genomes]
rs6592120	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592123	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs6592124	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs659427	0.85[ASN][1000 genomes]
rs694847	0.85[ASN][1000 genomes]
rs7924348	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.83[YRI][hapmap];0.89[ASN][1000 genomes]
rs7926588	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs7927435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928931	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs7930252	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs7939707	0.85[ASN][1000 genomes]
rs7940037	0.85[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83251000-83258200	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83251200-83258200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr11:83251600-83258200	Enhancers	Brain Substantia Nigra	brain
4	chr11:83252800-83258200	Enhancers	Fetal Intestine Large	intestine
5	chr11:83255600-83261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:83256000-83261400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:83256200-83259200	Weak transcription	Hela-S3	cervix
8	chr11:83256200-83261400	Weak transcription	NHEK	skin
9	chr11:83257200-83265600	Weak transcription	Fetal Stomach	stomach
10	chr11:83257400-83260000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:83257400-83261600	Weak transcription	Fetal Lung	lung
12	chr11:83257600-83258600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:83257600-83261000	Weak transcription	Brain Angular Gyrus	brain
14	chr11:83257600-83261200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:83257600-83261200	Weak transcription	Brain Germinal Matrix	brain
16	chr11:83257800-83258400	Weak transcription	Fetal Brain Male	brain
17	chr11:83258000-83258200	Enhancers	Brain Anterior Caudate	brain

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