Variant report

Variant	rs12578243
Chromosome Location	chr12:103664869-103664870
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12579174	1.00[AMR][1000 genomes]
rs12579358	0.88[ASN][1000 genomes]
rs12579725	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12581862	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12582267	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17033634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17033645	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17033698	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs35730312	0.90[ASN][1000 genomes]
rs59258104	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59488535	0.84[ASN][1000 genomes]
rs60001902	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975641	chr12:103663103-103667663	Bivalent Enhancer Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103662800-103666200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:103664000-103665000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:103664200-103667400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:103664200-103671000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:103664800-103665000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr12:103664800-103665000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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