Variant report

Variant	rs12579174
Chromosome Location	chr12:103642843-103642844
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12423213	1.00[AFR][1000 genomes]
rs12423757	1.00[AFR][1000 genomes]
rs12424243	1.00[AFR][1000 genomes]
rs12426345	1.00[AFR][1000 genomes]
rs12578243	1.00[AMR][1000 genomes]
rs12579358	1.00[AFR][1000 genomes]
rs12579725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12582267	1.00[AFR][1000 genomes]
rs12582331	1.00[AFR][1000 genomes]
rs17033634	1.00[AMR][1000 genomes]
rs17033645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17033712	1.00[AFR][1000 genomes]
rs17033762	1.00[AFR][1000 genomes]
rs35730312	1.00[AFR][1000 genomes]
rs4147494	1.00[AFR][1000 genomes]
rs56670740	1.00[AFR][1000 genomes]
rs59258104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72487507	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832501	chr12:103463927-103648825	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103642800-103644200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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