Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103702824..103705384-chr12:103716372..103718257,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12423213	1.00[AFR][1000 genomes]
rs12423757	1.00[AFR][1000 genomes]
rs12424243	1.00[AFR][1000 genomes]
rs12426345	1.00[AFR][1000 genomes]
rs12578243	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12579174	1.00[AFR][1000 genomes]
rs12579358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12579725	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12581862	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12582331	1.00[AFR][1000 genomes]
rs17033634	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17033645	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17033698	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17033712	1.00[AFR][1000 genomes]
rs17033762	1.00[AFR][1000 genomes]
rs35730312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4147494	1.00[AFR][1000 genomes]
rs56670740	1.00[AFR][1000 genomes]
rs59258104	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs59488535	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60001902	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72487507	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103707200-103786400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103712600-103734800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr12:103716800-103722200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: