Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr12:103663027-103663093	HepG2	liver:	n/a	n/a
2	CREB1	chr12:103662708-103663324	GM12878	blood:	n/a	n/a
3	RUNX3	chr12:103662565-103663248	GM12878	blood:	n/a	chr12:103662826-103662835 chr12:103662826-103662835
4	ZNF263	chr12:103662946-103663268	HEK293-T-REx	kidney:	n/a	n/a
5	NFIC	chr12:103662619-103663271	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
C12orf42	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12423213	1.00[AFR][1000 genomes]
rs12423757	1.00[AFR][1000 genomes]
rs12424243	1.00[AFR][1000 genomes]
rs12426345	1.00[AFR][1000 genomes]
rs12578243	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12579174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12579358	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12579725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12581862	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12582267	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12582331	1.00[AFR][1000 genomes]
rs17033634	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17033698	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17033712	1.00[AFR][1000 genomes]
rs17033762	1.00[AFR][1000 genomes]
rs35730312	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4147494	1.00[AFR][1000 genomes]
rs56670740	1.00[AFR][1000 genomes]
rs59258104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59488535	0.83[ASN][1000 genomes]
rs60001902	0.83[ASN][1000 genomes]
rs72487507	1.00[AFR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103662600-103663600	Enhancers	Primary T cells fromperipheralblood	blood
2	chr12:103662800-103666200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr12:103663000-103663800	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr12:103663000-103663800	Bivalent Enhancer	Dnd41	blood

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