Variant report
| Variant | rs12590351 |
|---|---|
| Chromosome Location | chr14:63196385-63196386 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs12588779 | 0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12589213 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12590357 | 0.81[CHB][hapmap];0.80[JPT][hapmap] |
| rs17100282 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17100325 | 0.80[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17100387 | 0.80[CHB][hapmap];0.80[JPT][hapmap] |
| rs1844508 | 0.80[CHB][hapmap];0.85[JPT][hapmap] |
| rs41490444 | 0.85[JPT][hapmap] |
| rs4533187 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs59427889 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs66531558 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs67434559 | 0.97[EUR][1000 genomes] |
| rs67701746 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7147349 | 0.80[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes] |
| rs72625622 | 0.97[EUR][1000 genomes] |
| rs72625624 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs8018091 | 0.81[CHB][hapmap];0.90[JPT][hapmap] |
| rs8020611 | 0.80[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes] |
| rs8022441 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527675 | chr14:63168547-63211280 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv976814 | chr14:63192257-63202004 | Enhancers ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
