Variant report

Variant	rs12588779
Chromosome Location	chr14:63236919-63236920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12589213	0.89[EUR][1000 genomes]
rs12590351	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs12590357	1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17100282	0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs17100325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17100387	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1844508	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2355736	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41490444	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs4533187	0.89[EUR][1000 genomes]
rs66531558	0.89[EUR][1000 genomes]
rs67434559	0.92[EUR][1000 genomes]
rs67701746	0.89[EUR][1000 genomes]
rs7147349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72625622	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72625624	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72625625	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625626	0.91[AFR][1000 genomes]
rs72625627	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72625628	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72625629	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8018091	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs8020611	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8022441	0.80[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes]
rs915061	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63227200-63246400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:63233200-63248800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:63236200-63237400	Weak transcription	Brain Germinal Matrix	brain
4	chr14:63236400-63237200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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