The 2.0 version of rSNPBase

Variant report

Variant rs1260424
Chromosome Location chr1:150361349-150361350
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150338400-150405200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:150339400-150372800 Weak transcription Fetal Muscle Leg muscle
3 chr1:150339400-150390600 Weak transcription Fetal Muscle Trunk muscle
4 chr1:150339600-150372800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
5 chr1:150339800-150368600 Weak transcription Primary hematopoietic stem cells blood
6 chr1:150339800-150390000 Weak transcription Thymus Thymus
7 chr1:150340000-150362000 Weak transcription Primary B cells from cord blood blood
8 chr1:150340000-150416800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:150340600-150366800 Weak transcription Fetal Brain Female brain
10 chr1:150342800-150361600 Weak transcription Fetal Thymus thymus
11 chr1:150343400-150378000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr1:150343600-150361400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr1:150343800-150378600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr1:150344000-150361600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:150346800-150361600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr1:150347000-150392400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr1:150347200-150361400 Weak transcription Primary B cells from peripheral blood blood
18 chr1:150347200-150361600 Weak transcription Psoas Muscle Psoas
19 chr1:150347200-150362000 Weak transcription HUES48 Cell Line embryonic stem cell
20 chr1:150347200-150372400 Weak transcription HUES64 Cell Line embryonic stem cell
21 chr1:150347200-150380000 Weak transcription iPS-18 Cell Line embryonic stem cell
22 chr1:150347800-150361600 Weak transcription ES-I3 Cell Line embryonic stem cell
23 chr1:150347800-150362200 Weak transcription Rectal Smooth Muscle rectum
24 chr1:150348000-150390400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
25 chr1:150348400-150372600 Weak transcription Hela-S3 cervix
26 chr1:150348600-150361800 Weak transcription Brain Angular Gyrus brain
27 chr1:150348600-150362000 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr1:150348600-150362200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr1:150349000-150362000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr1:150349000-150372000 Weak transcription Fetal Lung lung
31 chr1:150352600-150363600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:150355600-150369600 Weak transcription Fetal Stomach stomach
33 chr1:150355600-150382000 Weak transcription Lung lung
34 chr1:150356400-150381400 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr1:150356800-150361800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:150356800-150362000 Weak transcription Brain Cingulate Gyrus brain
37 chr1:150356800-150362000 Weak transcription Right Ventricle heart
38 chr1:150356800-150370200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr1:150357600-150362000 Enhancers Primary T helper 17 cells PMA-I stimulated --
40 chr1:150358400-150361800 Enhancers Primary T helper cells PMA-I stimulated --
41 chr1:150359000-150361600 Weak transcription Gastric stomach
42 chr1:150359000-150361600 Weak transcription Right Atrium heart
43 chr1:150359000-150362200 Enhancers Primary T helper cells fromperipheralblood blood
44 chr1:150359000-150366000 Weak transcription Spleen Spleen
45 chr1:150359200-150361600 Weak transcription Brain Substantia Nigra brain
46 chr1:150359200-150392000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
47 chr1:150359400-150361800 Weak transcription Brain Hippocampus Middle brain
48 chr1:150359400-150361800 Weak transcription Stomach Mucosa stomach
49 chr1:150359600-150361800 Weak transcription Pancreatic Islets Pancreatic Islet
50 chr1:150359600-150381200 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015