The 2.0 version of rSNPBase

Variant report

Variant rs6678973
Chromosome Location chr1:150398064-150398065
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150338400-150405200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:150340000-150416800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
3 chr1:150362600-150416600 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr1:150370000-150407800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr1:150373200-150442800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr1:150380600-150429800 Weak transcription Aorta Aorta
7 chr1:150381200-150414400 Weak transcription Fetal Brain Female brain
8 chr1:150381800-150398400 Weak transcription HUES6 Cell Line embryonic stem cell
9 chr1:150381800-150401200 Weak transcription iPS-15b Cell Line embryonic stem cell
10 chr1:150381800-150417400 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr1:150382000-150418200 Weak transcription Colonic Mucosa Colon
12 chr1:150382000-150432400 Weak transcription Fetal Brain Male brain
13 chr1:150382400-150407800 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr1:150382600-150414400 Weak transcription Lung lung
15 chr1:150382800-150412800 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr1:150382800-150414600 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr1:150382800-150414800 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:150383000-150416600 Weak transcription Muscle Satellite Cultured Cells --
19 chr1:150383400-150401000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr1:150383400-150413800 Weak transcription Brain Hippocampus Middle brain
21 chr1:150383400-150414000 Weak transcription NH-A brain
22 chr1:150383400-150414200 Weak transcription Left Ventricle heart
23 chr1:150383400-150414200 Weak transcription Osteobl bone
24 chr1:150383400-150419000 Weak transcription Fetal Kidney kidney
25 chr1:150383400-150419000 Weak transcription Gastric stomach
26 chr1:150383400-150432200 Weak transcription Right Ventricle heart
27 chr1:150383400-150443200 Weak transcription Pancreatic Islets Pancreatic Islet
28 chr1:150383600-150416800 Weak transcription Brain Inferior Temporal Lobe brain
29 chr1:150383600-150418200 Weak transcription Pancreas Pancrea
30 chr1:150385000-150407800 Weak transcription HepG2 liver
31 chr1:150385600-150415000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr1:150386800-150429800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
33 chr1:150387000-150414600 Weak transcription Rectal Smooth Muscle rectum
34 chr1:150387000-150414800 Weak transcription Brain Germinal Matrix brain
35 chr1:150388600-150416600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
36 chr1:150388600-150416600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
37 chr1:150388600-150416800 Weak transcription Primary T killer memory cells from peripheral blood blood
38 chr1:150388800-150408000 Weak transcription Primary hematopoietic stem cells blood
39 chr1:150388800-150413800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr1:150389400-150423400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr1:150389600-150399000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr1:150389600-150405600 Strong transcription Dnd41 blood
43 chr1:150389600-150417000 Weak transcription HMEC breast
44 chr1:150390000-150429600 Weak transcription A549 lung
45 chr1:150390200-150416400 Weak transcription Colon Smooth Muscle Colon
46 chr1:150391600-150414400 Weak transcription Ovary ovary
47 chr1:150391600-150416800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr1:150391800-150414200 Weak transcription Placenta Placenta
49 chr1:150391800-150416800 Weak transcription Primary T helper naive cells from peripheral blood blood
50 chr1:150392600-150409200 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015