Variant report

Variant	rs12619699
Chromosome Location	chr2:212168190-212168191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10195210	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497936	0.85[ASN][1000 genomes]
rs12611962	0.82[ASN][1000 genomes]
rs12620783	0.85[ASN][1000 genomes]
rs12694230	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13389611	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13419011	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432611	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432618	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437916	0.91[ASN][1000 genomes]
rs1465827	0.85[ASN][1000 genomes]
rs1465828	0.82[ASN][1000 genomes]
rs16845716	0.86[ASN][1000 genomes]
rs1836732	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2043790	0.82[ASN][1000 genomes]
rs4672608	0.83[ASN][1000 genomes]
rs4673601	0.85[ASN][1000 genomes]
rs57474880	0.94[ASN][1000 genomes]
rs71422736	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834522	chr2:212066442-212225328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12619699	UNC80	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212166600-212168200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:212166800-212168600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:212166800-212168600	Enhancers	Brain Germinal Matrix	brain
4	chr2:212167000-212168600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:212167200-212168200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr2:212167200-212168600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:212167200-212168600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:212167400-212168200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:212167800-212168200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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