Variant report
| Variant | rs13419011 |
|---|---|
| Chromosome Location | chr2:212161732-212161733 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10195210 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10497936 | 0.85[ASN][1000 genomes] |
| rs12611962 | 0.82[ASN][1000 genomes] |
| rs12619699 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12620783 | 0.85[ASN][1000 genomes] |
| rs12694230 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13389611 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13432611 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13432618 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1437916 | 0.91[ASN][1000 genomes] |
| rs1465827 | 0.85[ASN][1000 genomes] |
| rs1465828 | 0.82[ASN][1000 genomes] |
| rs16845716 | 0.86[ASN][1000 genomes] |
| rs1836732 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2043790 | 0.82[ASN][1000 genomes] |
| rs4672608 | 0.83[ASN][1000 genomes] |
| rs4673601 | 0.85[ASN][1000 genomes] |
| rs57474880 | 0.94[ASN][1000 genomes] |
| rs71422736 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834522 | chr2:212066442-212225328 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2252933 | chr2:212161381-212161805 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 3 | esv2955 | chr2:212161498-212162304 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs13419011 | UNC80 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:212159600-212166800 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
