Variant report
Variant | rs16845716 |
---|---|
Chromosome Location | chr2:212113283-212113284 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:212104642..212106703-chr2:212110727..212113768,3 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10195210 | 0.86[ASN][1000 genomes] |
rs10497936 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12611962 | 0.95[ASN][1000 genomes] |
rs12619699 | 0.86[ASN][1000 genomes] |
rs12620783 | 0.98[ASN][1000 genomes] |
rs12620896 | 0.90[ASN][1000 genomes] |
rs12694230 | 0.85[ASN][1000 genomes] |
rs13025294 | 0.83[ASN][1000 genomes] |
rs13389611 | 0.85[ASN][1000 genomes] |
rs13419011 | 0.86[ASN][1000 genomes] |
rs13432611 | 0.86[ASN][1000 genomes] |
rs13432618 | 0.86[ASN][1000 genomes] |
rs1437916 | 0.92[AFR][1000 genomes];0.92[ASN][1000 genomes] |
rs1465827 | 0.98[ASN][1000 genomes] |
rs1465828 | 0.90[ASN][1000 genomes] |
rs1836732 | 0.85[ASN][1000 genomes] |
rs2043790 | 0.95[ASN][1000 genomes] |
rs4672608 | 0.97[ASN][1000 genomes] |
rs4673601 | 0.98[ASN][1000 genomes] |
rs57474880 | 0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs71422736 | 0.98[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv834522 | chr2:212066442-212225328 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:212112200-212114400 | Enhancers | Liver | Liver |