Variant report
| Variant | rs71422736 |
|---|---|
| Chromosome Location | chr2:212092528-212092529 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10195210 | 0.85[ASN][1000 genomes] |
| rs10497936 | 0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12611962 | 0.97[ASN][1000 genomes] |
| rs12619699 | 0.85[ASN][1000 genomes] |
| rs12620783 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12620896 | 0.91[ASN][1000 genomes] |
| rs12694230 | 0.86[ASN][1000 genomes] |
| rs13025294 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13389611 | 0.86[ASN][1000 genomes] |
| rs13419011 | 0.85[ASN][1000 genomes] |
| rs13432611 | 0.85[ASN][1000 genomes] |
| rs13432618 | 0.85[ASN][1000 genomes] |
| rs1437916 | 0.94[ASN][1000 genomes] |
| rs1465827 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1465828 | 0.91[ASN][1000 genomes] |
| rs16845716 | 0.98[ASN][1000 genomes] |
| rs1836732 | 0.86[ASN][1000 genomes] |
| rs2043790 | 0.97[ASN][1000 genomes] |
| rs4672608 | 0.95[ASN][1000 genomes] |
| rs4673601 | 1.00[ASN][1000 genomes] |
| rs57474880 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460064 | chr2:212045919-212101698 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv470511 | chr2:212045919-212101698 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv584312 | chr2:212045919-212101698 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv834522 | chr2:212066442-212225328 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:212090800-212101800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
