Variant report

Variant	rs12632359
Chromosome Location	chr3:34997354-34997355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11925888	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12053892	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1474299	0.82[ASN][1000 genomes]
rs17032385	0.81[ASN][1000 genomes]
rs4575830	0.82[ASN][1000 genomes]
rs4678724	0.83[ASN][1000 genomes]
rs56235912	0.80[ASN][1000 genomes]
rs62260224	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73061969	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73063843	0.86[ASN][1000 genomes]
rs73063864	0.95[ASN][1000 genomes]
rs7650825	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7653203	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876686	chr3:34967346-35075355	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34996600-35000400	Enhancers	Dnd41	blood
2	chr3:34996800-34999800	Enhancers	Primary T cells from cord blood	blood
3	chr3:34997000-34997400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:34997000-34997400	Bivalent Enhancer	Fetal Thymus	thymus
5	chr3:34997000-34997800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:34997200-34997600	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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