Variant report
| Variant | rs1474299 |
|---|---|
| Chromosome Location | chr3:34934006-34934007 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:34927797..34931152-chr3:34931708..34934301,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11925888 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12053892 | 0.80[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12632359 | 0.82[ASN][1000 genomes] |
| rs1357428 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17032340 | 0.91[ASN][1000 genomes] |
| rs17032385 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2071488 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4549234 | 0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4575830 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4678716 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4678717 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4678724 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs56235912 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs58778451 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs59750319 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs62260224 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6550306 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6792813 | 0.91[ASN][1000 genomes] |
| rs73061969 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73063843 | 0.96[ASN][1000 genomes] |
| rs73063864 | 0.87[ASN][1000 genomes] |
| rs7625986 | 0.83[ASN][1000 genomes] |
| rs7653203 | 0.87[ASN][1000 genomes] |
| rs940047 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv590052 | chr3:34910172-34937547 | Weak transcription Enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:34934000-34934600 | Weak transcription | Fetal Brain Male | brain |
