Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11925888	0.83[EUR][1000 genomes]
rs12053892	0.90[ASN][1000 genomes]
rs12635860	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1357428	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1474299	0.91[ASN][1000 genomes]
rs17032385	0.90[ASN][1000 genomes]
rs2071488	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4549234	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4575830	0.89[ASN][1000 genomes]
rs4678716	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4678717	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4678724	0.90[ASN][1000 genomes]
rs56235912	0.89[ASN][1000 genomes]
rs58778451	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59750319	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62260224	0.91[ASN][1000 genomes]
rs6550306	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6784632	0.83[ASN][1000 genomes]
rs6792813	1.00[ASN][1000 genomes]
rs73061969	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73063843	0.87[ASN][1000 genomes]
rs7625986	0.91[ASN][1000 genomes]
rs7650825	0.82[EUR][1000 genomes]
rs940047	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34905400-34906800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:34905400-34907400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:34905400-34907600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:34905600-34907600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:34906200-34906800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:34906200-34907400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:34906200-34907400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:34906200-34907600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:34906200-34907600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:34906400-34906800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr3:34906400-34907400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr3:34906400-34907400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:34906600-34906800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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