Variant report

Variant	rs7625986
Chromosome Location	chr3:34907493-34907494
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12053892	0.83[ASN][1000 genomes]
rs1357428	0.81[ASN][1000 genomes]
rs1474299	0.83[ASN][1000 genomes]
rs17032340	0.91[ASN][1000 genomes]
rs17032385	0.82[ASN][1000 genomes]
rs2071488	0.83[ASN][1000 genomes]
rs4549234	0.91[ASN][1000 genomes]
rs4575830	0.82[ASN][1000 genomes]
rs4678716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4678717	0.87[ASN][1000 genomes]
rs4678724	0.82[ASN][1000 genomes]
rs56235912	0.85[ASN][1000 genomes]
rs58778451	0.85[ASN][1000 genomes]
rs59750319	0.86[ASN][1000 genomes]
rs62260224	0.83[ASN][1000 genomes]
rs6550306	0.84[ASN][1000 genomes]
rs6792813	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73061969	0.81[ASN][1000 genomes]
rs940047	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34905400-34907600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:34905600-34907600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:34906200-34907600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:34906200-34907600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:34906800-34908000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:34907400-34907600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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