Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12053892	0.83[ASN][1000 genomes]
rs12635860	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1357428	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1474299	0.85[ASN][1000 genomes]
rs17032340	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17032385	0.83[ASN][1000 genomes]
rs2071488	0.81[ASN][1000 genomes]
rs4549234	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4575830	0.83[ASN][1000 genomes]
rs4678716	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4678717	0.86[ASN][1000 genomes]
rs4678724	0.84[ASN][1000 genomes]
rs56235912	0.83[ASN][1000 genomes]
rs58778451	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59750319	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62260224	0.85[ASN][1000 genomes]
rs6550306	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6784632	0.93[ASN][1000 genomes]
rs6792813	0.89[ASN][1000 genomes]
rs73061969	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73063843	0.84[ASN][1000 genomes]
rs7625986	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv432407	chr3:34869616-34898125	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs940047	SLC22A14	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34883800-34887800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:34885600-34897400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:34886000-34888400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:34886000-34897000	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:34886800-34889200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:34887000-34887600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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